LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-149-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
ERVK3-1
hsa-miR-149-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3778-3796
0.042
1
6mer
1762-1782
0.002
0
RP11-70F11.11
hsa-miR-149-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546911
Biotype: lincRNA
Gene id: ENSG00000258135
Gene Name: RP11-70F11.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-78
0.043
2
AC093391.2
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110200.1
Biotype: antisense
Gene id: NR_110200.1 (gene)
Gene Name: AC093391.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-329
0.034
9
9mer
150-169
0.006
4
6mer
178-201
0.002
3
7mer
150-165
0.001
0
CTA-212A2.3
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6240-6264
0.005
0
6mer
333-349
0.004
1
6mer
621-640
0.003
0
8mer
11863-11878
0.003
2
6mer
720-740
0.003
2
6mer
1042-1064
0.002
0
6mer
13257-13271
0.002
0
6mer
10559-10581
0.002
0
6mer
4806-4828
0.002
1
6mer
9881-9906
0.002
1
6mer
8652-8668
0.002
1
6mer
11627-11643
0.001
1
6mer
6025-6041
0.001
1
6mer
13390-13406
0.001
0
6mer
11854-11875
0.001
2
6mer
5855-5873
0.001
0
6mer
10701-10717
0.001
1
6mer
5658-5679
0.001
0
6mer
4270-4286
0.001
0
6mer
11147-11165
0.001
1
6mer
11315-11332
0.001
1
6mer
8785-8801
0.001
1
6mer
11175-11197
0.001
0
6mer
4949-4965
0.001
1
6mer
4918-4933
0.000
0
6mer
11991-12016
0.000
0
RP11-338C15.5
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1599-1614
0.020
1
8mer
1054-1073
0.016
2
6mer
425-445
0.004
4
6mer
1857-1878
0.003
2
C21orf67
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615847
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
369-389
0.033
0
7mer
176-198
0.003
1
6mer
1504-1525
0.003
0
6mer
190-212
0.002
1
7mer
245-263
0.002
0
RPL34-AS1
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3054-3071
0.033
1
6mer
246-271
0.004
1
6mer
2896-2911
0.003
1
6mer
1852-1866
0.002
1
6mer
412-430
0.002
0
AC091729.9
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110069.1
Biotype: antisense
Gene id: NR_110069.1 (gene)
Gene Name: AC091729.9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-329
0.040
0
6mer
1706-1722
0.002
0
6mer
155-174
0.002
1
RPL34-AS1
hsa-miR-149-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509984
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
395-412
0.038
1
6mer
237-252
0.005
1
XLOC_010043
hsa-miR-149-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020754
Biotype: transcript isomorph
Gene id: XLOC_010043
Gene Name: XLOC_010043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-625
0.018
0
7mer
155-172
0.013
1
6mer
1290-1304
0.005
1
6mer
244-265
0.005
1
6mer
721-746
0.002
0
LINC00950
hsa-miR-149-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5106-5132
0.029
0
7mer
5121-5137
0.007
1
7mer
1100-1124
0.003
0
6mer
4622-4645
0.002
1
6mer
1031-1054
0.001
1
6mer
1950-1971
0.001
Not Conserved
XXyac-YX155B6.5
hsa-miR-149-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595668
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-402
0.043
2
DARS-AS1
hsa-miR-149-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444406
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-171
0.040
9
6mer
20-43
0.003
3
CTC-529P8.1
hsa-miR-149-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515519
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-118
0.023
3
6mer
405-416
0.009
4
7mer
173-199
0.007
1
6mer
98-115
0.003
3
CTD-3099C6.9
hsa-miR-149-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598322
Biotype: sense_intronic
Gene id: ENSG00000269825
Gene Name: CTD-3099C6.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-480
0.038
0
6mer
1141-1163
0.002
0
6mer
1762-1778
0.002
1
6mer
1925-1943
0.001
1
CTB-176F20.3
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1927-1942
0.015
0
7mer
720-734
0.012
0
6mer
208-223
0.008
0
6mer
862-872
0.004
0
6mer
2438-2452
0.002
0
6mer
2462-2484
0.001
0
AC012594.1
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609666
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
807-823
0.021
0
9mer
847-864
0.009
0
6mer
791-816
0.006
1
7mer
851-866
0.004
Not Conserved
6mer
371-395
0.003
1
HOTTIP
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000472494
Biotype: antisense
Gene id: ENSG00000243766
Gene Name: HOTTIP
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1949-1971
0.025
4
8mer+wobble
255-278
0.010
1
7mer
1957-1977
0.004
2
7mer
1452-1470
0.002
3
6mer
1359-1379
0.001
1
XLOC_012633
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026291
Biotype: transcript isomorph
Gene id: XLOC_012633
Gene Name: XLOC_012633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-150
0.036
0
6mer
155-176
0.006
0
XLOC_012004
hsa-miR-149-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2671-2688
0.019
0
8mer
2674-2695
0.014
6
6mer
2799-2816
0.004
2
7mer
1611-1628
0.003
0
6mer
2111-2127
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept