LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000190
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000937
Biotype: transcript isomorph
Gene id: XLOC_000190
Gene Name: XLOC_000190
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-287
0.033
5
6mer
810-824
0.003
1
6mer
3481-3506
0.002
0
6mer
3783-3807
0.002
0
6mer
475-489
0.002
0
6mer
1524-1542
0.001
1
6mer
3929-3948
0.001
Not Conserved
6mer
3624-3640
0.001
0
AC012594.1
hsa-miR-149-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609532
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
770-786
0.021
0
9mer
810-827
0.009
0
6mer
754-779
0.006
1
7mer
814-829
0.004
Not Conserved
6mer
294-318
0.004
1
MEG3
hsa-miR-149-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-476
0.037
3
6mer
1692-1707
0.002
2
6mer
2318-2338
0.002
6
7mer
2477-2497
0.002
1
6mer
2520-2539
0.000
2
LINC01140
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-439
0.035
1
8mer
739-758
0.003
1
6mer
949-976
0.003
2
6mer
5-31
0.002
2
6mer
739-755
0.001
1
XLOC_006293
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012895
Biotype: transcript isomorph
Gene id: XLOC_006293
Gene Name: XLOC_006293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-369
0.025
1
6mer
2475-2485
0.009
3
6mer
2205-2222
0.004
1
6mer
2788-2811
0.002
1
6mer
253-272
0.002
0
6mer
2628-2642
0.002
1
6mer
1481-1497
0.001
1
GTF3C2-AS1
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589232
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-162
0.035
0
7mer
138-158
0.009
0
RP11-86H7.7
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435559
Biotype: lincRNA
Gene id: ENSG00000235565
Gene Name: RP11-86H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1589-1602
0.025
2
8mer
1888-1900
0.014
1
6mer
455-476
0.002
3
6mer
2082-2101
0.002
0
AC099684.1
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425277
Biotype: antisense
Gene id: ENSG00000228133
Gene Name: AC099684.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
340-360
0.044
6
INMT-FAM188B
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037598.1
Biotype: sense
Gene id: NR_037598.1 (gene)
Gene Name: INMT-FAM188B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3061-3082
0.028
4
7mer
2996-3009
0.007
4
7mer
2922-2943
0.005
3
6mer
3072-3090
0.002
0
7mer
1384-1401
0.001
1
7mer
1317-1343
0.001
0
XLOC_014281
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029341
Biotype: transcript isomorph
Gene id: XLOC_014281
Gene Name: XLOC_014281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-45
0.030
1
7mer
792-813
0.003
1
9mer
1724-1738
0.003
0
6mer
25-42
0.003
1
6mer
630-646
0.002
1
8mer
3477-3500
0.001
Not Conserved
6mer
1684-1704
0.001
0
6mer
2326-2342
0.001
0
MALAT1
hsa-miR-149-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000618132
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-673
0.044
6
PKI55
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562038
Biotype: lincRNA
Gene id: ENSG00000260804
Gene Name: PKI55
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3078-3103
0.037
0
6mer
666-676
0.003
1
6mer
3077-3100
0.002
0
6mer
1584-1600
0.001
0
6mer
1616-1636
0.000
1
XXyac-YM21GA2.7
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399186
Biotype: antisense
Gene id: ENSG00000214888
Gene Name: XXyac-YM21GA2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-66
0.041
0
6mer
1655-1681
0.002
Not Conserved
FGD5-AS1
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426200
Biotype: antisense
Gene id: ENSG00000225733
Gene Name: FGD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1821-1846
0.043
5
XLOC_007057
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014978
Biotype: transcript isomorph
Gene id: XLOC_007057
Gene Name: XLOC_007057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-305
0.025
1
7mer
1601-1614
0.007
1
7mer
232-254
0.006
2
6mer
408-424
0.003
0
6mer
591-607
0.002
0
6mer
575-600
0.001
0
XLOC_012786
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026443
Biotype: transcript isomorph
Gene id: XLOC_012786
Gene Name: XLOC_012786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
207-228
0.029
3
8mer
39-60
0.009
3
7mer
42-60
0.003
4
6mer
20-37
0.003
1
AC012594.1
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610274
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
608-624
0.021
0
9mer
648-665
0.009
0
6mer
592-617
0.006
1
7mer
652-667
0.004
Not Conserved
6mer
450-472
0.003
1
RP4-760C5.5
hsa-miR-149-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-555
0.020
0
7mer
684-703
0.015
0
6mer
375-389
0.004
0
6mer
3611-3631
0.002
Not Conserved
6mer
2919-2931
0.002
0
MEG3
hsa-miR-149-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554639
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-463
0.040
3
6mer
1430-1454
0.003
3
LINC00857
hsa-miR-149-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422847
Biotype: lincRNA
Gene id: ENSG00000237523
Gene Name: LINC00857
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1857-1878
0.038
0
7mer
544-570
0.003
0
6mer
2015-2029
0.003
0
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