LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-88H9.2
hsa-miR-149-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438293
Biotype: lincRNA
Gene id: ENSG00000231437
Gene Name: RP11-88H9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2991-3005
0.031
1
9mer
2319-2335
0.014
0
AC074212.5
hsa-miR-149-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000559756
Biotype: antisense
Gene id: ENSG00000259605
Gene Name: AC074212.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1199-1224
0.011
Not Conserved
7mer
1383-1398
0.010
5
7mer
1199-1220
0.009
5
7mer
1222-1236
0.004
1
7mer
641-657
0.003
0
6mer
502-515
0.003
1
7mer
1122-1146
0.003
1
6mer
1236-1259
0.002
4
Z84812.4
hsa-miR-149-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568710
Biotype: processed_transcript
Gene id: ENSG00000260803
Gene Name: Z84812.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-747
0.044
0
AC012309.5
hsa-miR-149-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592712
Biotype: lincRNA
Gene id: ENSG00000226686
Gene Name: AC012309.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1449-1468
0.021
0
7mer
1198-1216
0.006
0
8mer
511-535
0.006
0
6mer
1475-1500
0.005
0
6mer
1440-1465
0.004
1
6mer
1079-1096
0.002
0
6mer
471-490
0.002
0
XLOC_006923
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014546
Biotype: transcript isomorph
Gene id: XLOC_006923
Gene Name: XLOC_006923
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3186-3210
0.029
3
6mer
3887-3901
0.003
1
7mer
2584-2607
0.003
1
6mer
3900-3920
0.003
0
8mer
219-241
0.003
0
6mer
548-564
0.003
0
6mer
1190-1205
0.001
1
6mer
2596-2614
0.000
1
MEG3
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046465.2
Biotype: lincRNA
Gene id: NR_046465.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.041
3
6mer
1351-1375
0.004
3
XLOC_000649
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001361
Biotype: transcript isomorph
Gene id: XLOC_000649
Gene Name: XLOC_000649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-619
0.044
0
RP11-513I15.6
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586413
Biotype: antisense
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
991-1006
0.039
2
7mer
982-1003
0.005
1
XLOC_002806
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006965
Biotype: transcript isomorph
Gene id: XLOC_002806
Gene Name: XLOC_002806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-71
0.039
2
7mer
56-68
0.005
1
DARS-AS1
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438432
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-286
0.034
9
9mer
107-126
0.007
4
6mer
135-158
0.002
3
7mer
107-122
0.001
0
AC006019.4
hsa-miR-149-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451116
Biotype: antisense
Gene id: ENSG00000233363
Gene Name: AC006019.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2882-2897
0.026
0
7mer
1022-1043
0.008
1
9mer
2003-2025
0.003
0
6mer
2706-2723
0.002
1
7mer
779-795
0.002
1
6mer
2007-2025
0.001
1
6mer
2980-3005
0.001
Not Conserved
6mer
1543-1562
0.001
0
LINC00887
hsa-miR-149-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024480.1
Biotype: lincRNA
Gene id: NR_024480.1 (gene)
Gene Name: LINC00887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2029-2049
0.026
1
7mer
2199-2225
0.005
0
9mer
1527-1549
0.004
1
6mer
2255-2272
0.003
1
7mer
1454-1467
0.002
0
6mer
1786-1804
0.001
0
7mer
1617-1634
0.001
Not Conserved
6mer
1754-1779
0.001
0
6mer
1531-1557
0.001
1
7mer
1573-1590
0.000
0
CTD-2054N24.2
hsa-miR-149-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560059
Biotype: lincRNA
Gene id: ENSG00000259363
Gene Name: CTD-2054N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-523
0.022
0
8mer
513-530
0.022
1
XLOC_005677
hsa-miR-149-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012690
Biotype: transcript isomorph
Gene id: XLOC_005677
Gene Name: XLOC_005677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-378
0.035
5
7mer
1553-1578
0.003
5
6mer
1926-1941
0.001
1
8mer+wobble
1793-1819
0.001
1
6mer
2502-2523
0.001
1
6mer
4894-4910
0.001
0
6mer
4048-4060
0.001
Not Conserved
6mer
2464-2479
0.001
1
FLJ12825
hsa-miR-149-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515617
Biotype: lincRNA
Gene id: ENSG00000248265
Gene Name: FLJ12825
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-70
0.034
6
7mer
3508-3526
0.006
0
6mer
2684-2706
0.002
1
6mer
1529-1556
0.001
6
6mer
1528-1544
0.001
0
6mer
1618-1640
0.000
0
RP11-439L18.2
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421237
Biotype: lincRNA
Gene id: ENSG00000224460
Gene Name: RP11-439L18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
86-108
0.032
6
8mer
69-86
0.012
5
ASB16-AS1
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591166
Biotype: antisense
Gene id: ENSG00000267080
Gene Name: ASB16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-252
0.032
4
6mer
44-66
0.004
1
6mer
612-632
0.003
1
6mer
76-100
0.003
1
6mer
486-504
0.002
1
RP11-110H1.8
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582983
Biotype: lincRNA
Gene id: ENSG00000264464
Gene Name: RP11-110H1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1855-1874
0.029
1
6mer
1620-1636
0.004
1
6mer
1210-1229
0.004
4
6mer
364-386
0.003
1
6mer
1029-1044
0.002
2
6mer
332-348
0.002
1
XLOC_000895
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001553
Biotype: transcript isomorph
Gene id: XLOC_000895
Gene Name: XLOC_000895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-648
0.028
0
8mer
284-308
0.016
1
RP11-117D22.1
hsa-miR-149-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429099
Biotype: lincRNA
Gene id: ENSG00000226938
Gene Name: RP11-117D22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-56
0.031
1
7mer
253-270
0.006
2
6mer
139-158
0.005
2
6mer
160-181
0.002
2
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