LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009139
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019306
Biotype: transcript isomorph
Gene id: XLOC_009139
Gene Name: XLOC_009139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-146
0.028
1
6mer
143-168
0.016
2
MEG3
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.041
3
6mer
1425-1449
0.003
3
MEG3
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000423456
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.041
3
6mer
1545-1569
0.004
3
CTD-2033D15.3
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616754
Biotype: antisense
Gene id: ENSG00000278621
Gene Name: CTD-2033D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
116-134
0.045
1
AC093627.8
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000478759
Biotype: lincRNA
Gene id: ENSG00000242611
Gene Name: AC093627.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-52
0.040
1
6mer
402-421
0.004
1
XLOC_009324
hsa-miR-149-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020022
Biotype: transcript isomorph
Gene id: XLOC_009324
Gene Name: XLOC_009324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
56-81
0.027
0
7mer
192-209
0.018
4
XLOC_007035
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16782-16803
0.006
0
6mer
13229-13256
0.003
0
6mer
13609-13629
0.002
0
6mer
8401-8419
0.002
1
6mer
12964-12987
0.002
0
6mer
206-222
0.002
0
6mer
12824-12851
0.002
0
6mer
12411-12427
0.002
0
6mer
12111-12133
0.002
1
7mer
14867-14883
0.002
0
6mer
17989-18007
0.002
0
6mer
7677-7700
0.001
0
6mer
3176-3196
0.001
1
7mer
14986-15009
0.001
0
6mer
16238-16257
0.001
0
6mer
4553-4572
0.001
1
6mer
6193-6215
0.001
1
6mer
3345-3361
0.001
0
6mer
12348-12375
0.001
0
6mer
12676-12701
0.001
0
6mer
6375-6385
0.001
1
6mer
11974-11996
0.001
1
6mer
12748-12773
0.001
0
6mer
6542-6567
0.001
1
6mer
8893-8919
0.001
1
6mer
14423-14443
0.001
0
6mer
13903-13923
0.001
0
6mer
14275-14295
0.001
0
6mer
4540-4554
0.001
0
DKFZP434H168
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567381
Biotype: antisense
Gene id: ENSG00000261439
Gene Name: DKFZP434H168
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-236
0.015
2
8mer
704-721
0.010
1
7mer
621-645
0.007
6
7mer
1114-1129
0.006
6
6mer
1487-1509
0.004
6
6mer
1658-1680
0.003
6
RP11-680F8.1
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-92
0.017
0
7mer
2352-2376
0.015
1
7mer
83-101
0.004
0
6mer
520-542
0.003
1
6mer
172-189
0.002
Not Conserved
6mer
201-224
0.001
1
6mer
1644-1670
0.001
1
8mer+mismatch
1410-1427
0.001
0
RP11-320M16.2
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557371
Biotype: antisense
Gene id: ENSG00000258580
Gene Name: RP11-320M16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-192
0.040
1
6mer
19-33
0.005
1
DKFZP434H168
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_026889.1
Biotype: antisense
Gene id: NR_026889.1 (gene)
Gene Name: DKFZP434H168
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-233
0.015
2
8mer
701-718
0.010
1
7mer
618-642
0.007
6
7mer
1111-1126
0.006
6
6mer
1484-1506
0.004
6
6mer
1655-1677
0.003
6
RP11-67L2.2
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1595-1621
0.020
1
8mer+wobble
4258-4275
0.007
1
6mer
54-76
0.004
1
7mer
4295-4319
0.003
2
6mer
4554-4575
0.002
4
6mer
4035-4059
0.002
1
7mer
3358-3380
0.001
1
6mer
755-771
0.001
1
7mer
2057-2082
0.001
0
6mer
721-739
0.001
1
6mer
3274-3298
0.001
1
AC009133.17
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565600
Biotype: antisense
Gene id: ENSG00000260719
Gene Name: AC009133.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1291-1312
0.041
0
6mer
199-213
0.003
0
NKX2-1-AS1
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521292
Biotype: antisense
Gene id: ENSG00000253563
Gene Name: NKX2-1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1614-1636
0.028
2
7mer
1247-1266
0.006
1
6mer
148-167
0.006
4
7mer
1637-1656
0.003
0
7mer
418-435
0.002
1
MEG3
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002766.2
Biotype: lincRNA
Gene id: NR_002766.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.041
3
6mer
1313-1337
0.004
3
MEG3
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398518
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-468
0.041
3
6mer
1424-1448
0.003
3
LINC00856
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434974
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-436
0.026
1
7mer
2035-2056
0.011
1
6mer
2480-2495
0.007
4
AC113617.1
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000448804
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-541
0.044
1
RP11-75L1.1
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541404
Biotype: lincRNA
Gene id: ENSG00000256582
Gene Name: RP11-75L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-529
0.034
0
6mer
467-493
0.011
0
CTD-2270P14.5
hsa-miR-149-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621230
Biotype: lincRNA
Gene id: ENSG00000276791
Gene Name: CTD-2270P14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2535-2557
0.018
1
7mer
3018-3035
0.010
0
7mer
3159-3176
0.006
1
6mer
2794-2810
0.004
1
6mer
2653-2676
0.002
Not Conserved
6mer
2529-2554
0.002
1
7mer
2190-2213
0.002
1
7mer
1061-1077
0.002
0
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