LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007089
hsa-miR-149-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7582-7603
0.006
1
6mer
2240-2261
0.006
1
8mer
5674-5698
0.006
Not Conserved
7mer
8616-8636
0.003
0
6mer
10158-10183
0.003
0
8mer
6372-6391
0.003
Not Conserved
8mer
6286-6308
0.003
Not Conserved
6mer
3055-3066
0.002
0
6mer
4309-4328
0.002
0
7mer
4508-4531
0.002
Not Conserved
6mer
4030-4051
0.002
0
6mer
4423-4440
0.002
0
6mer
2761-2785
0.002
0
7mer
3875-3889
0.001
Not Conserved
7mer
6089-6110
0.001
Not Conserved
7mer
5186-5198
0.001
Not Conserved
6mer
4277-4291
0.001
0
6mer
5512-5534
0.001
Not Conserved
6mer
6006-6027
0.000
Not Conserved
6mer
4257-4275
0.000
Not Conserved
XLOC_013095
hsa-miR-149-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027580
Biotype: transcript isomorph
Gene id: XLOC_013095
Gene Name: XLOC_013095
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-884
0.018
4
9mer
2292-2310
0.006
0
7mer
2124-2148
0.005
0
8mer+wobble
861-879
0.003
2
7mer
852-871
0.003
3
7mer
1153-1171
0.003
0
7mer
1079-1094
0.002
3
7mer
1215-1233
0.002
3
7mer
2279-2299
0.002
Not Conserved
6mer
933-948
0.001
2
6mer
838-862
0.001
1
7mer
2288-2306
0.001
Not Conserved
6mer
992-1011
0.001
0
AC034220.3
hsa-miR-149-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000621103
Biotype: antisense
Gene id: ENSG00000233006
Gene Name: AC034220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-215
0.028
3
8mer
660-679
0.006
3
6mer
1432-1448
0.003
1
6mer
1200-1212
0.003
7
6mer
989-1005
0.003
1
6mer
254-277
0.003
1
6mer
771-797
0.001
1
CTD-3116E22.8
hsa-miR-149-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000613300
Biotype: lincRNA
Gene id: ENSG00000277587
Gene Name: CTD-3116E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-155
0.047
0
SH3PXD2A-AS1
hsa-miR-149-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038940.1
Biotype: antisense
Gene id: NR_038940.1 (gene)
Gene Name: SH3PXD2A-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-155
0.032
0
8mer
1307-1328
0.008
1
7mer
700-721
0.003
2
6mer
1307-1325
0.002
1
6mer
930-944
0.002
0
DARS-AS1
hsa-miR-149-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419808
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-329
0.036
9
9mer
150-169
0.007
4
6mer
178-201
0.002
3
7mer
150-165
0.001
0
CTA-243E7.1
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1564-1582
0.007
3
7mer
2652-2666
0.004
1
7mer
12970-12993
0.004
0
7mer
9467-9488
0.004
1
8mer
2453-2476
0.003
1
8mer
9686-9711
0.003
2
7mer
7671-7685
0.002
0
7mer
1372-1393
0.002
1
8mer+mismatch
7931-7951
0.002
2
6mer
1827-1849
0.001
1
6mer
5986-6013
0.001
Not Conserved
6mer
507-525
0.001
0
6mer
7255-7271
0.001
1
6mer
5095-5118
0.001
0
6mer
11447-11464
0.001
1
6mer
2056-2074
0.001
1
6mer
1346-1371
0.001
2
6mer
7472-7498
0.001
1
8mer
2630-2655
0.001
1
6mer
9689-9711
0.001
1
6mer
7118-7137
0.001
1
6mer
4619-4636
0.001
0
6mer
2456-2476
0.001
1
6mer
2347-2364
0.001
0
6mer
4587-4609
0.001
0
8mer
7567-7585
0.001
1
6mer
7105-7127
0.001
1
6mer
7613-7631
0.000
1
6mer
5009-5026
0.000
0
NUTM2B-AS1
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600376
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-470
0.047
0
H19
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414790
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-97
0.020
4
8mer
1869-1889
0.018
1
7mer
438-457
0.005
1
7mer
1790-1812
0.004
0
LINC01134
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442673
Biotype: lincRNA
Gene id: ENSG00000236423
Gene Name: LINC01134
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2560
0.019
0
8mer
1548-1567
0.009
0
8mer
1219-1236
0.004
0
7mer
1070-1094
0.004
1
7mer
761-784
0.003
0
7mer
583-604
0.003
1
7mer
1367-1392
0.002
1
7mer
1212-1233
0.001
0
9mer
1591-1616
0.000
0
8mer
1591-1612
0.000
1
LINC01125
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605017
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
227-241
0.017
1
6mer
493-511
0.016
1
6mer
49-67
0.013
1
LINC01002
hsa-miR-149-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614841
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-335
0.027
1
6mer
391-401
0.020
1
AC138035.2
hsa-miR-149-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604669
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
586-605
0.019
1
6mer
596-618
0.019
1
6mer
500-526
0.006
0
6mer
279-296
0.002
Not Conserved
6mer
472-487
0.001
Not Conserved
XLOC_001591
hsa-miR-149-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003793
Biotype: transcript isomorph
Gene id: XLOC_001591
Gene Name: XLOC_001591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-604
0.042
2
6mer
717-744
0.005
2
RP11-676J12.7
hsa-miR-149-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576252
Biotype: antisense
Gene id: ENSG00000262003
Gene Name: RP11-676J12.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-509
0.039
5
6mer
6-31
0.005
1
6mer
149-165
0.002
1
XLOC_005224
hsa-miR-149-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011763
Biotype: transcript isomorph
Gene id: XLOC_005224
Gene Name: XLOC_005224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-755
0.027
1
7mer
98-121
0.011
1
6mer
910-928
0.002
1
6mer
1079-1095
0.001
1
7mer
1411-1430
0.001
0
6mer
938-960
0.001
0
6mer
1574-1596
0.001
0
6mer
1445-1461
0.001
0
AC113617.1
hsa-miR-149-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000419264
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-366
0.046
1
XLOC_006753
hsa-miR-149-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-296
0.018
1
8mer
3985-4003
0.009
1
6mer
6285-6304
0.003
6
7mer
2882-2898
0.003
0
7mer
1393-1407
0.002
1
6mer
305-326
0.002
1
6mer
3791-3815
0.002
5
6mer
6231-6253
0.002
1
7mer
2279-2297
0.001
1
7mer
1968-1992
0.001
Not Conserved
6mer
1880-1902
0.001
0
6mer
2686-2710
0.001
1
6mer
3578-3592
0.001
1
6mer
3617-3634
0.001
1
7mer
5380-5397
0.001
1
6mer
1921-1947
0.000
1
ZEB2-AS1
hsa-miR-149-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610937
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
545-558
0.037
7
7mer
544-554
0.009
7
XLOC_001854
hsa-miR-149-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004015
Biotype: transcript isomorph
Gene id: XLOC_001854
Gene Name: XLOC_001854
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1969-1994
0.037
0
6mer
31-46
0.003
1
6mer
475-491
0.002
0
6mer
1968-1991
0.002
0
6mer
507-527
0.001
1
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