LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
H19
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-84
0.021
4
8mer
1850-1870
0.018
1
7mer
425-444
0.005
1
7mer
1771-1793
0.004
0
RP11-796E2.4
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5610-5625
0.018
0
8mer
2173-2196
0.017
8
8mer
850-876
0.006
1
6mer
2812-2823
0.002
2
6mer
5123-5140
0.002
0
6mer
1843-1861
0.001
0
6mer
3276-3296
0.001
1
TUNAR
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000503525
Biotype: lincRNA
Gene id: ENSG00000250366
Gene Name: TUNAR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2977-2994
0.035
1
8mer
2362-2382
0.004
1
6mer
1996-2017
0.002
0
6mer
3004-3021
0.001
1
6mer
2977-2991
0.001
1
6mer
2343-2368
0.001
1
6mer
73-95
0.001
2
6mer
1255-1271
0.001
1
6mer
2005-2028
0.001
3
RP11-521D12.5
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000474667
Biotype: lincRNA
Gene id: ENSG00000243491
Gene Name: RP11-521D12.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-59
0.024
1
8mer
36-59
0.014
1
7mer
743-761
0.004
0
7mer
202-229
0.004
1
7mer
495-509
0.002
0
RP11-304F15.4
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000515692
Biotype: lincRNA
Gene id: ENSG00000248954
Gene Name: RP11-304F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1349-1368
0.022
7
8mer
556-574
0.010
1
8mer
690-706
0.007
1
6mer
958-978
0.004
7
6mer
1161-1180
0.002
1
7mer
546-571
0.002
1
6mer
867-882
0.001
2
RP11-66N24.7
hsa-miR-149-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000622438
Biotype: antisense
Gene id: ENSG00000273618
Gene Name: RP11-66N24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1545-1563
0.013
1
8mer
1619-1640
0.013
4
8mer
745-763
0.004
3
7mer
1434-1448
0.004
1
6mer
1545-1560
0.003
3
8mer+mismatch
1001-1025
0.003
5
6mer
1205-1219
0.003
1
6mer
1337-1353
0.002
1
6mer
1321-1340
0.002
0
XLOC_011740
hsa-miR-149-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024424
Biotype: transcript isomorph
Gene id: XLOC_011740
Gene Name: XLOC_011740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-409
0.027
1
6mer
6496-6523
0.003
0
6mer
246-270
0.003
2
7mer
5112-5127
0.002
1
6mer
4795-4818
0.001
0
7mer
706-727
0.001
0
6mer
1944-1969
0.001
2
6mer
4446-4463
0.001
0
6mer
5369-5394
0.001
1
6mer
4938-4953
0.001
1
6mer
5094-5113
0.001
1
6mer
5239-5261
0.001
1
6mer
3039-3053
0.001
0
6mer
5184-5201
0.001
0
6mer
3207-3223
0.001
0
6mer
5229-5248
0.001
1
6mer
3060-3085
0.000
1
RP11-46E17.8
hsa-miR-149-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8493-8518
0.012
0
6mer
111-132
0.007
1
8mer
1124-1149
0.003
1
6mer
8476-8499
0.003
3
9mer
4716-4739
0.003
1
7mer
4618-4631
0.003
1
7mer
8505-8529
0.003
2
6mer
9019-9038
0.002
1
6mer
8196-8213
0.001
1
9mer
4461-4484
0.001
0
6mer
7052-7073
0.001
1
6mer
5616-5641
0.001
1
6mer
4442-4467
0.001
1
6mer
7913-7933
0.001
1
6mer
8057-8079
0.001
1
6mer
8029-8047
0.001
0
6mer
5456-5474
0.001
1
8mer
4461-4480
0.001
1
6mer
5495-5506
0.001
1
6mer
4708-4735
0.001
1
6mer
4805-4828
0.000
0
DICER1-AS1
hsa-miR-149-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554631
Biotype: antisense
Gene id: ENSG00000235706
Gene Name: DICER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-272
0.038
1
6mer
1283-1305
0.003
1
7mer
244-269
0.003
1
6mer
1157-1173
0.002
0
6mer
1127-1141
0.002
1
RP11-728G15.1
hsa-miR-149-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544339
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-71
0.047
0
MEG3
hsa-miR-149-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000451743
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.044
3
6mer
1295-1319
0.004
3
CTB-55O6.12
hsa-miR-149-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588387
Biotype: antisense
Gene id: ENSG00000267169
Gene Name: CTB-55O6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-75
0.037
1
6mer
2767-2786
0.003
1
6mer
2687-2696
0.003
1
7mer
81-100
0.003
1
6mer
999-1016
0.001
2
RP11-475A13.2
hsa-miR-149-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-337
0.035
0
7mer
318-342
0.008
0
6mer
922-946
0.004
0
CTB-109A12.1
hsa-miR-149-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509655
Biotype: sense_overlapping
Gene id: ENSG00000251405
Gene Name: CTB-109A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-207
0.011
1
7mer
81-94
0.011
1
7mer
1613-1627
0.010
1
7mer
418-439
0.010
1
7mer
235-256
0.005
1
AF064858.8
hsa-miR-149-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000417335
Biotype: lincRNA
Gene id: ENSG00000235888
Gene Name: AF064858.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-606
0.047
1
BZRAP1-AS1
hsa-miR-149-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582348
Biotype: antisense
Gene id: ENSG00000265148
Gene Name: BZRAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-434
0.043
3
6mer
407-431
0.004
3
RP11-402D21.2
hsa-miR-149-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610263
Biotype: antisense
Gene id: ENSG00000272817
Gene Name: RP11-402D21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-45
0.038
1
6mer
517-537
0.006
1
6mer
14-30
0.003
1
RP11-411K7.1
hsa-miR-149-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-190
0.037
2
6mer
2558-2581
0.003
1
6mer
168-187
0.002
1
6mer
314-337
0.002
0
6mer
379-397
0.002
1
RP11-335L23.4
hsa-miR-149-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609144
Biotype: lincRNA
Gene id: ENSG00000273180
Gene Name: RP11-335L23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
331-343
0.041
1
7mer
335-351
0.006
1
RP11-70F11.11
hsa-miR-149-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551922
Biotype: lincRNA
Gene id: ENSG00000258135
Gene Name: RP11-70F11.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-78
0.047
2
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