LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LINC01038
hsa-miR-149-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457858
Biotype: lincRNA
Gene id: ENSG00000229011
Gene Name: LINC01038
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-322
0.044
2
6mer
297-319
0.005
4
LOC100506990
hsa-miR-149-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_040091.1
Biotype: lincRNA
Gene id: NR_040091.1 (gene)
Gene Name: LOC100506990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2706-2731
0.034
2
7mer
1287-1314
0.008
1
7mer
2842-2867
0.004
0
6mer
1919-1935
0.002
0
6mer
1676-1701
0.001
1
LINC00649
hsa-miR-149-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609132
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-460
0.036
1
7mer
455-465
0.009
0
6mer
283-303
0.004
1
RP11-548H3.1
hsa-miR-149-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607946
Biotype: antisense
Gene id: ENSG00000273466
Gene Name: RP11-548H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-544
0.040
2
6mer
253-269
0.006
6
6mer
238-262
0.002
3
PWRN1
hsa-miR-149-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564898
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-278
0.048
1
PP14571
hsa-miR-149-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000538012
Biotype: retained_intron
Gene id: ENSG00000218416
Gene Name: PP14571
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-83
0.013
1
7mer
1399-1423
0.008
0
6mer
152-172
0.006
2
8mer
1393-1420
0.006
1
8mer
588-613
0.006
0
7mer
165-187
0.003
0
6mer
1413-1434
0.003
0
6mer
987-1008
0.002
2
LINC00086
hsa-miR-149-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000417443
Biotype: lincRNA
Gene id: ENSG00000178947
Gene Name: LINC00086
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3779-3798
0.033
2
7mer
1165-1184
0.003
0
7mer
2345-2364
0.003
1
7mer
3907-3922
0.002
1
8mer
3455-3469
0.001
0
6mer
1474-1485
0.001
0
7mer
3340-3357
0.001
1
6mer
2900-2925
0.001
1
7mer
2641-2662
0.001
1
6mer
2633-2657
0.001
1
6mer
3850-3876
0.001
0
6mer
3333-3346
0.001
1
7mer
3474-3494
0.001
Not Conserved
RP11-521O16.2
hsa-miR-149-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564121
Biotype: lincRNA
Gene id: ENSG00000260163
Gene Name: RP11-521O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3529-3553
0.035
1
8mer
3576-3602
0.005
0
6mer
166-179
0.003
0
6mer
2529-2546
0.002
1
6mer
1187-1212
0.001
1
6mer
1363-1380
0.001
0
6mer
3543-3563
0.001
1
AC025165.8
hsa-miR-149-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000444467
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-274
0.016
Not Conserved
7mer
2173-2191
0.014
5
7mer
1830-1846
0.006
1
7mer
1593-1613
0.005
3
6mer
118-130
0.003
4
7mer
1286-1303
0.002
2
6mer
1041-1064
0.002
1
6mer
1280-1303
0.001
1
LINC00640
hsa-miR-149-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555801
Biotype: lincRNA
Gene id: ENSG00000258479
Gene Name: LINC00640
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-145
0.044
1
6mer
120-142
0.005
1
RP11-85B7.2
hsa-miR-149-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1560-1586
0.018
1
6mer
425-446
0.007
3
7mer
5231-5256
0.005
3
7mer
3707-3723
0.005
1
7mer
700-725
0.003
0
9mer
3957-3982
0.002
1
6mer
3425-3443
0.002
4
6mer
817-835
0.001
1
7mer
3304-3320
0.001
1
6mer
1941-1962
0.001
1
7mer
3178-3200
0.001
Not Conserved
6mer
3961-3982
0.001
0
6mer
2442-2460
0.001
1
6mer
1195-1222
0.001
0
6mer
3233-3259
0.000
1
6mer
1538-1562
0.000
1
AP000221.1
hsa-miR-149-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419694
Biotype: lincRNA
Gene id: ENSG00000229962
Gene Name: AP000221.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
866-881
0.048
1
XLOC_012769
hsa-miR-149-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026423
Biotype: transcript isomorph
Gene id: XLOC_012769
Gene Name: XLOC_012769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
984-1010
0.035
1
7mer
748-764
0.014
1
FAM27L
hsa-miR-149-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426869
Biotype: lincRNA
Gene id: ENSG00000178130
Gene Name: FAM27L
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-509
0.022
0
7mer
552-576
0.019
1
6mer
571-592
0.007
0
MEG3
hsa-miR-149-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521404
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.044
3
6mer
1181-1205
0.004
3
LCMT1-AS2
hsa-miR-149-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2371-2393
0.029
0
9mer
1421-1446
0.018
1
6mer
1425-1446
0.001
0
RP11-319F12.2
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444155
Biotype: lincRNA
Gene id: ENSG00000227121
Gene Name: RP11-319F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-76
0.048
1
XLOC_008164
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017321
Biotype: transcript isomorph
Gene id: XLOC_008164
Gene Name: XLOC_008164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1427-1448
0.032
4
6mer
1338-1359
0.006
5
8mer
1438-1458
0.006
0
6mer
1430-1448
0.002
2
6mer
845-863
0.002
1
RP11-640I15.1
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584540
Biotype: antisense
Gene id: ENSG00000266261
Gene Name: RP11-640I15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-150
0.031
5
7mer
124-147
0.014
5
6mer
250-270
0.003
1
CYP4F35P
hsa-miR-149-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582957
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2740-2766
0.023
0
7mer
2175-2190
0.016
0
6mer
2813-2835
0.006
0
6mer
1238-1263
0.002
0
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