LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-620J15.2
hsa-miR-149-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548955
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-455
0.050
6
RP13-870H17.3
hsa-miR-149-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000617529
Biotype: lincRNA
Gene id: ENSG00000254872
Gene Name: RP13-870H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-252
0.015
1
7mer
769-782
0.009
1
7mer
1123-1141
0.006
1
7mer
381-394
0.004
1
7mer
297-323
0.004
1
7mer
637-664
0.003
1
6mer
333-354
0.002
0
7mer
1962-1988
0.002
0
6mer
670-689
0.002
1
6mer
708-728
0.001
Not Conserved
7mer
1496-1514
0.001
0
6mer
2393-2417
0.001
Not Conserved
6mer
1599-1624
0.001
0
6mer
1534-1558
0.000
1
C12orf36
hsa-miR-149-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000531049
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-504
0.047
5
8mer+mismatch
125-145
0.003
1
XLOC_002619
hsa-miR-149-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005994
Biotype: transcript isomorph
Gene id: XLOC_002619
Gene Name: XLOC_002619
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-52
0.046
2
6mer
22-49
0.004
1
LINC00898
hsa-miR-149-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000380990
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3683-3698
0.031
0
8mer+wobble
3729-3749
0.008
1
7mer
3899-3913
0.006
Not Conserved
6mer
3740-3763
0.002
0
7mer
2730-2756
0.001
1
6mer
3451-3472
0.001
1
6mer
2367-2393
0.001
0
LINC00887
hsa-miR-149-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414120
Biotype: lincRNA
Gene id: ENSG00000214145
Gene Name: LINC00887
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2029-2049
0.029
1
7mer
2199-2225
0.007
0
9mer
1527-1549
0.005
1
6mer
2255-2271
0.003
1
7mer
1454-1467
0.002
0
6mer
1786-1804
0.001
0
7mer
1617-1634
0.001
Not Conserved
6mer
1754-1779
0.001
0
6mer
1531-1557
0.001
1
7mer
1573-1590
0.000
0
LINC00999
hsa-miR-149-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
17-34
0.008
1
6mer
351-373
0.005
1
6mer
4890-4907
0.004
1
6mer
733-752
0.004
1
6mer
646-673
0.002
0
6mer
1101-1116
0.002
1
6mer
4696-4715
0.002
0
6mer
743-765
0.002
1
6mer
4473-4490
0.002
1
6mer
2019-2041
0.001
0
7mer
3390-3416
0.001
Not Conserved
6mer
4209-4229
0.001
Not Conserved
6mer
908-925
0.001
Not Conserved
6mer
1227-1243
0.001
0
7mer
3243-3269
0.001
0
6mer
4266-4292
0.001
Not Conserved
7mer
3146-3171
0.001
0
7mer
3096-3122
0.001
0
6mer
2123-2148
0.001
0
7mer
3633-3659
0.001
0
7mer
3292-3318
0.001
0
7mer
2461-2487
0.001
Not Conserved
6mer
2192-2212
0.001
0
8mer
2704-2731
0.000
Not Conserved
6mer
2367-2392
0.000
0
7mer
3683-3708
0.000
Not Conserved
8mer
2851-2878
0.000
Not Conserved
7mer
2559-2584
0.000
Not Conserved
7mer
2998-3024
0.000
Not Conserved
7mer
3047-3073
0.000
Not Conserved
7mer
2802-2828
0.000
Not Conserved
7mer
2415-2440
0.000
Not Conserved
7mer
2949-2975
0.000
Not Conserved
7mer
3439-3465
0.000
Not Conserved
7mer
3585-3610
0.000
Not Conserved
7mer
3536-3561
0.000
Not Conserved
7mer
2900-2926
0.000
Not Conserved
7mer
3488-3514
0.000
Not Conserved
6mer
2261-2281
0.000
0
7mer
2607-2632
0.000
Not Conserved
7mer
2655-2681
0.000
Not Conserved
7mer
2754-2779
0.000
Not Conserved
6mer
3194-3220
0.000
Not Conserved
6mer
2233-2256
0.000
0
8mer+mismatch
2865-2882
0.000
Not Conserved
8mer+mismatch
2248-2274
0.000
Not Conserved
8mer+mismatch
2718-2735
0.000
Not Conserved
AC025171.1
hsa-miR-149-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399543
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2287-2310
0.037
1
6mer
2329-2345
0.007
1
6mer
1797-1812
0.002
0
6mer
1011-1036
0.002
0
6mer
1424-1443
0.002
0
CTC-203F4.2
hsa-miR-149-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602502
Biotype: antisense
Gene id: ENSG00000270021
Gene Name: CTC-203F4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-365
0.035
2
7mer
1559-1573
0.005
0
8mer
749-770
0.005
1
6mer
1860-1877
0.005
2
RP1-37N7.1
hsa-miR-149-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579352
Biotype: antisense
Gene id: ENSG00000264177
Gene Name: RP1-37N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4674-4690
0.043
1
6mer
3892-3912
0.002
1
8mer
3021-3044
0.002
0
6mer
1196-1218
0.001
Not Conserved
6mer
619-644
0.001
Not Conserved
6mer
1997-2020
0.001
Not Conserved
6mer
3776-3797
0.000
0
C16orf82
hsa-miR-149-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000505035
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-136
0.025
3
8mer
2306-2322
0.011
3
7mer
667-687
0.007
0
6mer
116-133
0.004
4
6mer
251-274
0.002
3
RP11-1060J15.9
hsa-miR-149-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619202
Biotype: antisense
Gene id: ENSG00000276261
Gene Name: RP11-1060J15.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-370
0.049
Not Conserved
LINC01391
hsa-miR-149-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495287
Biotype: lincRNA
Gene id: ENSG00000244578
Gene Name: LINC01391
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2837-2859
0.010
0
7mer
793-818
0.010
0
7mer
1052-1073
0.008
1
6mer
3472-3495
0.006
4
7mer
3020-3041
0.005
1
6mer
3126-3145
0.003
3
6mer
367-392
0.002
0
7mer
1165-1189
0.002
4
6mer
678-703
0.001
1
6mer
3307-3322
0.001
0
RP11-989E6.10
hsa-miR-149-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
3944-3960
0.017
0
7mer
1932-1953
0.011
0
8mer
943-963
0.011
0
8mer+wobble
3688-3705
0.006
Not Conserved
7mer
820-838
0.002
0
6mer
1262-1284
0.002
0
6mer
1672-1692
0.000
Not Conserved
AC012594.1
hsa-miR-149-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610113
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
703-719
0.020
0
9mer
743-760
0.009
0
6mer
687-712
0.006
1
6mer
53-77
0.006
1
7mer
747-762
0.004
Not Conserved
6mer
304-320
0.004
0
CTD-2619J13.14
hsa-miR-149-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593393
Biotype: lincRNA
Gene id: ENSG00000232098
Gene Name: CTD-2619J13.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-90
0.044
Not Conserved
7mer
2030-2050
0.001
Not Conserved
6mer
2130-2140
0.001
Not Conserved
7mer
2124-2143
0.001
Not Conserved
7mer
2118-2136
0.001
0
6mer
2089-2112
0.001
Not Conserved
6mer
1866-1881
0.000
Not Conserved
6mer
1742-1764
0.000
Not Conserved
6mer
1763-1778
0.000
Not Conserved
XLOC_007858
hsa-miR-149-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015886
Biotype: transcript isomorph
Gene id: XLOC_007858
Gene Name: XLOC_007858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-782
0.019
0
7mer
306-320
0.011
0
6mer
4588-4605
0.003
1
6mer
4353-4371
0.003
3
7mer
3304-3323
0.002
1
6mer
242-268
0.002
0
6mer
1810-1829
0.002
0
7mer
3768-3793
0.001
0
6mer
845-861
0.001
0
6mer
1012-1030
0.001
0
6mer
2894-2920
0.001
1
6mer
2453-2478
0.001
0
6mer
2284-2300
0.001
1
6mer
2421-2435
0.001
0
H19
hsa-miR-149-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000422826
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-50
0.021
4
8mer
1382-1402
0.019
1
7mer
391-410
0.005
1
7mer
1303-1325
0.004
0
LINC01224
hsa-miR-149-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-294
0.022
0
7mer
1058-1069
0.010
0
6mer
676-698
0.010
1
6mer
541-551
0.004
0
6mer
2247-2272
0.003
0
LBX1-AS1
hsa-miR-149-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430651
Biotype: antisense
Gene id: ENSG00000227128
Gene Name: LBX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
172-187
0.020
0
7mer
2432-2454
0.015
1
8mer+wobble
1118-1140
0.004
1
7mer
1188-1214
0.003
2
6mer
170-183
0.003
0
6mer
529-549
0.002
1
7mer
1336-1362
0.002
1
6mer
1151-1176
0.001
0
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