LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
DYNLL1-AS1
hsa-miR-149-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500741
Biotype: antisense
Gene id: ENSG00000248008
Gene Name: DYNLL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1172-1188
0.040
1
7mer
921-945
0.007
2
6mer
1572-1595
0.005
4
RP11-61G23.2
hsa-miR-149-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520032
Biotype: lincRNA
Gene id: ENSG00000253321
Gene Name: RP11-61G23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-539
0.026
4
7mer
109-134
0.025
0
RP11-10C24.3
hsa-miR-149-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604982
Biotype: lincRNA
Gene id: ENSG00000271643
Gene Name: RP11-10C24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-228
0.038
1
6mer
270-287
0.005
1
6mer
1081-1098
0.005
0
6mer
414-437
0.003
1
XLOC_010101
hsa-miR-149-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020255
Biotype: transcript isomorph
Gene id: XLOC_010101
Gene Name: XLOC_010101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-882
0.026
6
7mer
1938-1957
0.009
4
6mer
252-274
0.004
3
6mer
158-173
0.003
2
6mer
1011-1034
0.003
1
8mer
2211-2228
0.003
1
6mer
659-681
0.002
0
6mer
2535-2560
0.001
1
6mer
2177-2200
0.001
1
FAM66B
hsa-miR-149-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606573
Biotype: lincRNA
Gene id: ENSG00000215374
Gene Name: FAM66B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-662
0.028
1
8mer+wobble
2164-2183
0.014
0
7mer
2358-2382
0.006
0
6mer
1999-2025
0.004
1
TPTEP1
hsa-miR-149-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588548
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-215
0.033
Not Conserved
8mer
242-265
0.008
Not Conserved
7mer
1935-1955
0.006
Not Conserved
6mer
418-438
0.002
Not Conserved
6mer
335-353
0.002
Not Conserved
FLJ36777
hsa-miR-149-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-368
0.024
1
8mer
1158-1171
0.014
1
8mer
522-546
0.005
0
6mer
1519-1544
0.003
1
6mer
684-707
0.002
1
6mer
807-823
0.002
0
LINC01040
hsa-miR-149-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000425048
Biotype: lincRNA
Gene id: ENSG00000226037
Gene Name: LINC01040
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-415
0.051
0
RP11-620J15.2
hsa-miR-149-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-883
0.026
6
7mer
1939-1958
0.009
4
6mer
253-275
0.004
3
6mer
159-174
0.003
2
8mer
2212-2229
0.003
1
6mer
1012-1035
0.002
1
6mer
660-682
0.002
0
6mer
2536-2561
0.001
1
6mer
2178-2201
0.001
1
XLOC_013407
hsa-miR-149-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027419
Biotype: transcript isomorph
Gene id: XLOC_013407
Gene Name: XLOC_013407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1312-1333
0.040
1
7mer
1315-1340
0.007
1
6mer
329-347
0.004
0
TTTY15
hsa-miR-149-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-132
0.051
0
ANO1-AS2
hsa-miR-149-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531347
Biotype: antisense
Gene id: ENSG00000254417
Gene Name: ANO1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-296
0.022
0
7mer
133-154
0.014
1
7mer
128-142
0.011
1
6mer
551-567
0.004
1
XLOC_000615
hsa-miR-149-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000418
Biotype: transcript isomorph
Gene id: XLOC_000615
Gene Name: XLOC_000615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
266-284
0.051
2
XXyac-YX155B6.5
hsa-miR-149-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597931
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-461
0.051
2
RP11-360K13.1
hsa-miR-149-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1181-1199
0.034
Not Conserved
8mer
29-53
0.013
Not Conserved
6mer
29-50
0.003
Not Conserved
AC016747.3
hsa-miR-149-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420918
Biotype: lincRNA
Gene id: ENSG00000212978
Gene Name: AC016747.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2052-2076
0.015
1
7mer
868-888
0.013
0
7mer
1493-1506
0.012
1
6mer
419-435
0.005
1
6mer
284-300
0.003
1
6mer
451-468
0.003
1
HAS2-AS1
hsa-miR-149-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514180
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-90
0.030
1
8mer
495-515
0.012
2
6mer
344-359
0.004
4
6mer
223-246
0.003
4
6mer
761-774
0.002
4
RP13-467H17.1
hsa-miR-149-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569285
Biotype: antisense
Gene id: ENSG00000261693
Gene Name: RP13-467H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3291-3313
0.015
2
7mer
526-552
0.007
1
8mer
98-116
0.006
0
7mer
177-199
0.006
1
8mer
1578-1605
0.005
1
7mer
2025-2044
0.004
1
6mer
2588-2603
0.003
1
6mer
1932-1952
0.002
0
6mer
1149-1165
0.001
1
8mer
1610-1627
0.001
1
8mer+wobble
1591-1608
0.001
0
6mer
1671-1696
0.000
0
6mer
1652-1669
0.000
0
CTA-280A3.2
hsa-miR-149-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
979-992
0.014
1
9mer
1215-1239
0.004
1
7mer
988-1005
0.004
1
9mer
1010-1022
0.004
0
7mer
1036-1055
0.003
0
7mer
996-1018
0.002
1
7mer
1008-1035
0.002
0
7mer
1184-1201
0.002
0
7mer
1215-1235
0.002
1
7mer
1159-1175
0.001
1
7mer
1192-1209
0.001
1
6mer
338-353
0.001
0
7mer
1074-1089
0.001
0
6mer
2923-2934
0.001
1
7mer
5262-5275
0.001
1
7mer
3615-3641
0.001
Not Conserved
7mer
5322-5341
0.001
0
7mer
1093-1110
0.001
0
7mer
1202-1222
0.001
1
7mer
1117-1136
0.001
0
6mer
5171-5186
0.001
1
6mer
1237-1252
0.001
1
6mer
1828-1845
0.001
0
UPK1A-AS1
hsa-miR-149-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000443196
Biotype: antisense
Gene id: ENSG00000226510
Gene Name: UPK1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-450
0.033
Not Conserved
8mer
202-222
0.017
2
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