LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-867G23.3
hsa-miR-149-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501708
Biotype: lincRNA
Gene id: ENSG00000245156
Gene Name: RP11-867G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2470-2486
0.032
2
8mer+wobble
2475-2494
0.009
1
7mer
2260-2280
0.004
2
7mer
1158-1185
0.003
0
6mer
508-524
0.002
1
6mer
672-698
0.001
0
6mer
1416-1432
0.001
1
6mer
1551-1573
0.001
1
RASAL2-AS1
hsa-miR-149-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419458
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-347
0.029
0
8mer
276-302
0.020
Not Conserved
6mer
1562-1574
0.002
0
6mer
1306-1322
0.002
2
HAGLR
hsa-miR-149-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416928
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-107
0.019
1
7mer
627-648
0.011
4
7mer
922-940
0.007
5
6mer
3853-3877
0.004
3
6mer
3227-3246
0.003
1
7mer
2061-2077
0.002
10
7mer
2335-2361
0.002
1
6mer
2609-2619
0.001
3
7mer
1658-1682
0.001
3
6mer
2438-2465
0.001
1
6mer
2167-2193
0.001
0
7mer
2157-2174
0.001
1
6mer
2094-2119
0.001
1
6mer
2297-2321
0.001
1
6mer
2283-2303
0.000
2
6mer
2066-2085
0.000
0
RP11-731K22.1
hsa-miR-149-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000567919
Biotype: lincRNA
Gene id: ENSG00000261467
Gene Name: RP11-731K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2466-2491
0.017
2
8mer
2559-2574
0.013
4
8mer+wobble
2561-2577
0.012
3
8mer
2193-2213
0.005
1
7mer
607-629
0.002
1
6mer
2470-2488
0.001
1
6mer
1503-1528
0.001
1
6mer
1212-1228
0.001
0
AC116366.6
hsa-miR-149-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000443093
Biotype: antisense
Gene id: ENSG00000234290
Gene Name: AC116366.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-127
0.047
1
6mer
2714-2735
0.003
2
6mer
3322-3342
0.002
1
CTC-492K19.4
hsa-miR-149-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599050
Biotype: antisense
Gene id: ENSG00000268366
Gene Name: CTC-492K19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-557
0.024
1
7mer
26-49
0.020
7
6mer
491-514
0.005
2
6mer
452-478
0.004
2
RP5-1098D14.1
hsa-miR-149-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608190
Biotype: lincRNA
Gene id: ENSG00000273384
Gene Name: RP5-1098D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-347
0.053
4
RP11-379B18.5
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468859
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1636-1651
0.026
4
7mer
505-524
0.010
0
7mer
551-568
0.010
1
6mer
1950-1971
0.004
0
7mer
1042-1064
0.004
1
XLOC_006677
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-446
0.011
1
6mer
1754-1765
0.004
0
6mer
285-300
0.004
1
6mer
1518-1541
0.003
1
6mer
1352-1370
0.003
2
6mer
1463-1482
0.002
1
6mer
1567-1586
0.002
0
6mer
1622-1641
0.002
0
6mer
1704-1723
0.002
0
6mer
1254-1272
0.002
1
6mer
1732-1757
0.002
Not Conserved
6mer
1408-1427
0.002
1
6mer
1380-1406
0.002
0
6mer
1114-1136
0.002
2
6mer
1000-1019
0.002
1
6mer
1303-1322
0.002
1
6mer
1163-1182
0.002
1
6mer
972-991
0.001
1
6mer
1226-1245
0.001
0
AC012594.1
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595011
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-807
0.020
0
7mer
385-407
0.010
0
9mer
831-848
0.009
0
6mer
775-800
0.006
1
7mer
835-850
0.004
Not Conserved
6mer
352-370
0.003
1
DSCR9
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454482
Biotype: lincRNA
Gene id: ENSG00000230366
Gene Name: DSCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1056-1079
0.040
0
8mer
1538-1557
0.011
0
6mer
1175-1198
0.002
1
AC007403.3
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427579
Biotype: lincRNA
Gene id: ENSG00000223859
Gene Name: AC007403.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.047
0
6mer
62-80
0.005
1
AC124789.1
hsa-miR-149-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617855
Biotype: antisense
Gene id: ENSG00000276170
Gene Name: AC124789.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-430
0.051
1
6mer
238-262
0.001
0
RP11-411K7.1
hsa-miR-149-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000511369
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-214
0.030
2
7mer
439-453
0.015
1
6mer
338-361
0.003
0
6mer
192-211
0.002
1
6mer
403-421
0.002
1
ST7-AS2
hsa-miR-149-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433969
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
502-528
0.038
1
6mer
98-116
0.008
1
6mer
506-530
0.006
1
LINC00960
hsa-miR-149-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-266
0.034
1
7mer
1027-1048
0.015
1
6mer
880-906
0.004
0
WASF3-AS1
hsa-miR-149-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000586418
Biotype: antisense
Gene id: ENSG00000237001
Gene Name: WASF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
571-590
0.050
0
6mer
575-596
0.002
0
DYNLL1-AS1
hsa-miR-149-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038854.1
Biotype: antisense
Gene id: NR_038854.1 (gene)
Gene Name: DYNLL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1162-1178
0.041
1
7mer
911-935
0.007
2
6mer
1562-1585
0.004
4
TTN-AS1
hsa-miR-149-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585625
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27-49
0.052
1
PCA3
hsa-miR-149-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412654
Biotype: antisense
Gene id: ENSG00000225937
Gene Name: PCA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1356-1371
0.042
2
6mer
3344-3366
0.004
4
7mer
1476-1491
0.004
2
7mer
3141-3167
0.003
Not Conserved
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