LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP3-412A9.17
hsa-miR-149-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3707-3728
0.009
3
8mer
12882-12908
0.007
1
7mer
6816-6841
0.006
1
6mer
6331-6352
0.003
2
6mer
5644-5665
0.003
4
7mer
3612-3635
0.002
1
6mer
7187-7213
0.002
1
6mer
3165-3181
0.002
1
6mer
15685-15702
0.001
1
6mer
7495-7511
0.001
0
7mer
14379-14404
0.001
1
6mer
3422-3439
0.001
1
6mer
15853-15867
0.001
1
6mer
15220-15236
0.001
0
6mer
9567-9586
0.001
0
6mer
14755-14770
0.001
1
6mer
15841-15854
0.001
0
6mer
15999-16017
0.001
Not Conserved
6mer
11054-11076
0.001
0
6mer
14402-14417
0.001
4
6mer
13963-13979
0.001
1
6mer
14920-14936
0.001
1
6mer
9405-9419
0.001
0
6mer
10301-10319
0.001
1
6mer
3707-3725
0.001
2
6mer
7630-7646
0.001
0
6mer
14780-14802
0.001
1
6mer
9427-9451
0.000
0
RP4-753D10.3
hsa-miR-149-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000419734
Biotype: sense_overlapping
Gene id: ENSG00000234646
Gene Name: RP4-753D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-199
0.054
2
RP11-142E9.1
hsa-miR-149-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-322
0.044
1
7mer
814-831
0.004
0
6mer
398-409
0.003
1
6mer
955-971
0.003
1
XLOC_004691
hsa-miR-149-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010226
Biotype: transcript isomorph
Gene id: XLOC_004691
Gene Name: XLOC_004691
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-39
0.054
1
XLOC_013771
hsa-miR-149-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028418
Biotype: transcript isomorph
Gene id: XLOC_013771
Gene Name: XLOC_013771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-381
0.005
Not Conserved
7mer
606-626
0.003
1
6mer
95-114
0.003
1
7mer
459-480
0.003
1
7mer
557-580
0.002
1
8mer
701-721
0.002
Not Conserved
6mer
252-272
0.002
1
7mer
508-528
0.002
Not Conserved
6mer
148-164
0.002
1
6mer
4507-4531
0.002
1
7mer
799-819
0.002
0
7mer
4209-4233
0.002
0
7mer
946-967
0.002
0
6mer
751-768
0.001
0
7mer
848-864
0.001
0
7mer
1142-1158
0.001
1
7mer
897-917
0.001
Not Conserved
7mer
3374-3394
0.001
Not Conserved
7mer
1191-1207
0.001
0
7mer
1093-1113
0.001
0
7mer
1387-1406
0.001
0
7mer
2196-2212
0.001
Not Conserved
7mer
1681-1705
0.001
Not Conserved
7mer
3007-3027
0.001
Not Conserved
7mer
1240-1261
0.001
0
6mer
4312-4329
0.001
0
7mer
3784-3801
0.001
Not Conserved
7mer
4104-4124
0.001
Not Conserved
7mer
3675-3695
0.001
Not Conserved
6mer
2093-2111
0.001
Not Conserved
6mer
2283-2297
0.001
Not Conserved
7mer
2335-2352
0.001
Not Conserved
7mer
1879-1899
0.001
Not Conserved
7mer
1289-1309
0.001
Not Conserved
7mer
1485-1505
0.001
0
6mer
1339-1357
0.001
0
6mer
4052-4068
0.000
0
7mer
1981-2001
0.000
Not Conserved
6mer
2494-2508
0.000
Not Conserved
7mer
1534-1555
0.000
Not Conserved
7mer
1583-1603
0.000
Not Conserved
7mer
3221-3238
0.000
Not Conserved
6mer
3271-3289
0.000
Not Conserved
7mer
1632-1648
0.000
Not Conserved
7mer
1932-1946
0.000
Not Conserved
6mer
2849-2865
0.000
Not Conserved
6mer
3323-3343
0.000
Not Conserved
6mer
2442-2461
0.000
Not Conserved
CTA-796E4.5
hsa-miR-149-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24036-24056
0.008
2
7mer
16546-16556
0.007
0
6mer
850-861
0.005
4
7mer
2950-2961
0.004
0
7mer
20445-20461
0.003
0
8mer
14387-14403
0.002
Not Conserved
7mer
22700-22716
0.002
1
7mer
24100-24119
0.002
0
7mer
21115-21128
0.002
1
6mer
12542-12566
0.002
3
6mer
11463-11482
0.002
1
6mer
14560-14581
0.002
2
6mer
6410-6433
0.002
1
6mer
21075-21093
0.002
2
6mer
14333-14347
0.001
0
6mer
3516-3533
0.001
0
6mer
14746-14761
0.001
1
6mer
19976-20000
0.001
1
6mer
855-877
0.001
Not Conserved
6mer
19550-19566
0.001
0
7mer
21213-21233
0.001
1
7mer
10187-10212
0.001
1
6mer
19620-19645
0.001
1
6mer
19585-19609
0.000
1
6mer
19600-19625
0.000
0
CTD-3098H1.2
hsa-miR-149-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000556021
Biotype: lincRNA
Gene id: ENSG00000259108
Gene Name: CTD-3098H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-405
0.030
2
7mer
272-293
0.012
1
8mer+wobble
124-142
0.005
1
7mer
127-142
0.004
1
6mer
303-329
0.003
2
HCFC1-AS1
hsa-miR-149-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438219
Biotype: antisense
Gene id: ENSG00000235802
Gene Name: HCFC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
307-324
0.054
1
RP11-120K19.4
hsa-miR-149-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612025
Biotype: antisense
Gene id: ENSG00000278017
Gene Name: RP11-120K19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-247
0.037
1
8mer
306-323
0.017
1
MEIS1-AS2
hsa-miR-149-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439433
Biotype: antisense
Gene id: ENSG00000230749
Gene Name: MEIS1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-178
0.044
6
6mer
581-601
0.010
8
RP11-303E16.6
hsa-miR-149-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568362
Biotype: antisense
Gene id: ENSG00000261838
Gene Name: RP11-303E16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-153
0.054
1
HOXD-AS2
hsa-miR-149-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426965
Biotype: antisense
Gene id: ENSG00000237380
Gene Name: HOXD-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-64
0.052
0
8mer
602-624
0.002
1
XLOC_004528
hsa-miR-149-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009497
Biotype: transcript isomorph
Gene id: XLOC_004528
Gene Name: XLOC_004528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-585
0.054
1
RP11-307C19.1
hsa-miR-149-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561283
Biotype: lincRNA
Gene id: ENSG00000259362
Gene Name: RP11-307C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3418-3433
0.021
1
9mer
3349-3357
0.010
1
8mer
1260-1277
0.009
1
7mer
3474-3487
0.008
1
6mer
564-580
0.003
2
6mer
3451-3461
0.002
0
6mer
530-555
0.001
1
6mer
1547-1573
0.001
1
LINC01503
hsa-miR-149-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436710
Biotype: lincRNA
Gene id: ENSG00000233901
Gene Name: LINC01503
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-106
0.035
3
7mer
581-607
0.014
0
6mer
785-801
0.005
1
XLOC_007383
hsa-miR-149-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015999
Biotype: transcript isomorph
Gene id: XLOC_007383
Gene Name: XLOC_007383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-186
0.048
Not Conserved
6mer
827-848
0.003
Not Conserved
6mer
1210-1232
0.002
Not Conserved
RP5-865N13.1
hsa-miR-149-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441459
Biotype: lincRNA
Gene id: ENSG00000236372
Gene Name: RP5-865N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2209-2230
0.035
1
7mer
1159-1172
0.008
1
9mer
1409-1426
0.007
0
9mer
1401-1418
0.003
1
RP11-403I13.8
hsa-miR-149-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621033
Biotype: retained_intron
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2912-2928
0.017
1
8mer
3255-3275
0.011
1
7mer
3255-3269
0.007
Not Conserved
6mer
3300-3317
0.006
1
8mer
1927-1944
0.004
0
7mer
2560-2582
0.003
Not Conserved
6mer
1916-1941
0.001
1
6mer
1338-1363
0.001
Not Conserved
6mer
645-664
0.001
0
6mer
1027-1051
0.001
Not Conserved
6mer
652-673
0.001
0
XLOC_002214
hsa-miR-149-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-203
0.027
0
6mer
824-847
0.006
1
6mer
762-781
0.005
1
6mer
182-203
0.004
0
6mer
1304-1330
0.004
0
6mer
927-952
0.002
0
7mer
1029-1055
0.001
Not Conserved
6mer
1242-1261
0.001
Not Conserved
6mer
1139-1158
0.001
Not Conserved
6mer
1201-1224
0.001
Not Conserved
6mer
1098-1121
0.001
Not Conserved
LINC00176
hsa-miR-149-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000358393
Biotype: lincRNA
Gene id: ENSG00000196421
Gene Name: LINC00176
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-152
0.022
1
7mer
1308-1330
0.016
1
7mer
122-144
0.007
2
6mer
1389-1413
0.005
1
7mer
1249-1271
0.003
Not Conserved
6mer
673-694
0.001
0
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