LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
TUNAR
hsa-miR-149-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000504119
Biotype: lincRNA
Gene id: ENSG00000250366
Gene Name: TUNAR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2719-2736
0.036
1
7mer
81-102
0.008
5
8mer
2104-2124
0.004
1
6mer
1738-1759
0.002
0
6mer
2746-2763
0.001
1
6mer
2719-2733
0.001
1
6mer
2085-2110
0.001
1
6mer
997-1013
0.001
1
6mer
1747-1770
0.001
3
WASF3-AS1
hsa-miR-149-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413063
Biotype: antisense
Gene id: ENSG00000237001
Gene Name: WASF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
298-317
0.053
0
6mer
302-323
0.003
0
FAM83C-AS1
hsa-miR-149-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000429167
Biotype: antisense
Gene id: ENSG00000235214
Gene Name: FAM83C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-287
0.056
0
CTD-3098H1.2
hsa-miR-149-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000555406
Biotype: lincRNA
Gene id: ENSG00000259108
Gene Name: CTD-3098H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-538
0.032
2
7mer
405-426
0.014
1
8mer+wobble
257-275
0.004
1
7mer
260-275
0.003
1
6mer
436-462
0.002
2
RP11-395P17.3
hsa-miR-149-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033374.1
Biotype: lincRNA
Gene id: NR_033374.1 (gene)
Gene Name: RP11-395P17.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-145
0.040
0
6mer
3352-3369
0.003
1
6mer
3117-3135
0.003
3
6mer
208-224
0.002
0
7mer
2070-2089
0.002
1
6mer
375-393
0.002
0
6mer
1173-1192
0.001
0
7mer
2534-2559
0.001
0
6mer
1660-1686
0.001
1
RP11-59J16.2
hsa-miR-149-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479610
Biotype: lincRNA
Gene id: ENSG00000240562
Gene Name: RP11-59J16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-591
0.052
1
6mer
287-307
0.004
1
XLOC_012034
hsa-miR-149-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024749
Biotype: transcript isomorph
Gene id: XLOC_012034
Gene Name: XLOC_012034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-146
0.051
1
7mer
687-703
0.004
1
XLOC_003038
hsa-miR-149-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
578-602
0.015
0
6mer
658-672
0.015
0
6mer
94-118
0.013
0
6mer
701-716
0.012
0
AC005330.2
hsa-miR-149-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590086
Biotype: lincRNA
Gene id: ENSG00000267372
Gene Name: AC005330.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-178
0.033
2
8mer
127-149
0.022
0
XLOC_013792
hsa-miR-149-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028441
Biotype: transcript isomorph
Gene id: XLOC_013792
Gene Name: XLOC_013792
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-224
0.025
2
8mer
1025-1042
0.024
0
6mer
191-214
0.004
0
6mer
590-609
0.003
1
AC008079.10
hsa-miR-149-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1257-1277
0.013
1
8mer
367-389
0.007
2
7mer
16384-16399
0.005
1
7mer
6002-6019
0.004
0
7mer
12447-12466
0.003
1
6mer
343-366
0.002
0
7mer
13347-13370
0.002
3
9mer
13343-13370
0.002
0
6mer
3206-3217
0.002
1
7mer
370-389
0.001
0
6mer
2742-2759
0.001
4
6mer
982-995
0.001
1
6mer
14518-14534
0.001
0
6mer
6776-6792
0.001
1
6mer
9401-9414
0.001
0
6mer
14198-14216
0.001
0
6mer
3981-3997
0.001
3
6mer
6912-6937
0.001
1
6mer
2247-2263
0.001
0
7mer
16325-16345
0.001
Not Conserved
6mer
11732-11749
0.001
0
6mer
12113-12129
0.001
0
6mer
9290-9309
0.000
0
6mer
12279-12297
0.000
0
6mer
12247-12272
0.000
Not Conserved
AC013480.2
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451514
Biotype: antisense
Gene id: ENSG00000226398
Gene Name: AC013480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-294
0.046
6
6mer
272-294
0.007
6
6mer
16-32
0.002
Not Conserved
LOC101926935
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3840-3856
0.020
0
6mer
5846-5862
0.008
0
6mer
5222-5243
0.007
0
7mer
933-949
0.007
Not Conserved
6mer
3012-3034
0.005
0
6mer
4128-4150
0.004
0
6mer
2842-2863
0.003
0
XLOC_013931
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
328-351
0.013
0
6mer
425-438
0.012
0
6mer
107-133
0.011
0
6mer
2134-2156
0.010
0
6mer
868-882
0.009
0
COLCA1
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5345-5360
0.032
7
8mer
4399-4412
0.013
3
7mer
5400-5423
0.005
5
6mer
3144-3162
0.001
1
6mer
4319-4340
0.001
4
6mer
3425-3441
0.001
1
6mer
2021-2031
0.001
0
8mer
3419-3433
0.001
1
6mer
3100-3121
0.000
1
XLOC_011223
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023377
Biotype: transcript isomorph
Gene id: XLOC_011223
Gene Name: XLOC_011223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
328-345
0.018
1
8mer
2782-2799
0.016
2
7mer
939-957
0.010
10
7mer
454-469
0.004
2
6mer
2695-2719
0.003
1
6mer
2718-2744
0.002
1
6mer
2437-2458
0.002
1
6mer
1424-1446
0.001
1
RP11-523H20.3
hsa-miR-149-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606287
Biotype: antisense
Gene id: ENSG00000272183
Gene Name: RP11-523H20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-407
0.032
1
8mer
231-250
0.017
1
6mer
470-489
0.005
1
6mer
388-404
0.002
1
H19
hsa-miR-149-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000439725
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1852-1872
0.023
1
7mer
58-84
0.021
4
7mer
1773-1795
0.006
0
7mer
425-444
0.005
1
CTA-941F9.10
hsa-miR-149-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13395-13417
0.014
0
7mer
16032-16043
0.002
1
7mer
21476-21502
0.002
1
6mer
11957-11977
0.002
0
7mer
2196-2210
0.002
0
8mer
14725-14740
0.002
1
7mer
14665-14684
0.002
6
6mer
7864-7886
0.001
0
7mer
14508-14532
0.001
3
6mer
3883-3909
0.001
0
6mer
7997-8020
0.001
1
7mer
14395-14417
0.001
4
6mer
5110-5127
0.001
1
6mer
12962-12984
0.001
1
6mer
19703-19719
0.001
1
6mer
12877-12893
0.001
0
7mer
14756-14775
0.001
6
6mer
19223-19233
0.001
1
6mer
2160-2178
0.001
0
6mer
14332-14350
0.001
1
6mer
3643-3659
0.001
0
6mer
3478-3492
0.001
0
6mer
3036-3052
0.001
0
6mer
11028-11053
0.001
1
6mer
3183-3202
0.001
0
7mer
14654-14668
0.001
2
6mer
15293-15313
0.001
1
6mer
15456-15470
0.001
Not Conserved
6mer
11203-11225
0.001
1
6mer
6260-6278
0.001
1
6mer
13094-13111
0.001
1
6mer
19535-19553
0.001
1
6mer
2327-2343
0.001
0
6mer
10097-10115
0.001
0
7mer
14785-14807
0.001
6
7mer
14953-14970
0.001
0
6mer
14919-14941
0.001
Not Conserved
6mer
3502-3524
0.000
0
6mer
10122-10147
0.000
0
6mer
14357-14382
0.000
1
6mer
14966-14985
0.000
0
6mer
14810-14830
0.000
1
ZNF561-AS1
hsa-miR-149-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1852-1868
0.015
0
6mer
600-616
0.013
0
6mer
460-485
0.011
0
6mer
1333-1359
0.009
0
6mer
1681-1704
0.008
0
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