LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_014266
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029834
Biotype: transcript isomorph
Gene id: XLOC_014266
Gene Name: XLOC_014266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-395
0.058
1
RP11-1049A21.2
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547942
Biotype: antisense
Gene id: ENSG00000257824
Gene Name: RP11-1049A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-444
0.058
1
XLOC_008392
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017703
Biotype: transcript isomorph
Gene id: XLOC_008392
Gene Name: XLOC_008392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
34-56
0.024
1
8mer
770-785
0.021
1
7mer
51-64
0.005
1
6mer
91-103
0.003
0
6mer
136-150
0.003
1
6mer
660-676
0.002
1
WASF3-AS1
hsa-miR-149-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585599
Biotype: antisense
Gene id: ENSG00000237001
Gene Name: WASF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
676-695
0.054
0
6mer
680-701
0.003
0
RP11-133K1.7
hsa-miR-149-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3492-3513
0.020
1
8mer
3534-3557
0.012
1
7mer
597-609
0.009
2
8mer
2012-2035
0.005
0
7mer
2248-2265
0.004
2
8mer
1667-1684
0.003
1
6mer
795-819
0.002
2
6mer
1395-1409
0.001
1
6mer
1271-1285
0.001
0
6mer
1506-1525
0.001
0
6mer
1516-1538
0.000
1
LINC00982
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606861
Biotype: antisense
Gene id: ENSG00000177133
Gene Name: LINC00982
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-201
0.031
6
8mer
2314-2331
0.008
1
8mer+wobble
1749-1773
0.007
1
7mer
2443-2465
0.004
1
7mer
2334-2351
0.004
1
7mer
2317-2342
0.002
1
6mer
1120-1141
0.001
1
6mer
2053-2070
0.001
Not Conserved
LOC648987
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1299-1324
0.040
1
6mer
2703-2728
0.008
1
6mer
2568-2590
0.007
1
6mer
2735-2753
0.003
0
XXyac-YX155B6.5
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000599864
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-477
0.044
2
7mer
164-188
0.013
1
CTA-228A9.4
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19803-19823
0.007
1
8mer
5084-5105
0.005
1
7mer
15538-15562
0.004
2
7mer
17438-17461
0.004
1
9mer
3108-3132
0.003
1
6mer
1051-1068
0.002
1
7mer
15039-15060
0.002
1
6mer
344-360
0.002
1
7mer
12307-12329
0.002
1
7mer
12858-12879
0.002
4
7mer
8249-8267
0.002
0
6mer
2955-2974
0.002
1
8mer
11344-11363
0.002
2
6mer
6759-6781
0.001
1
6mer
2096-2115
0.001
1
8mer
3427-3448
0.001
0
6mer
3877-3897
0.001
1
6mer
9461-9478
0.001
1
6mer
16805-16824
0.001
1
6mer
6958-6985
0.001
1
6mer
18892-18908
0.001
1
6mer
18758-18774
0.001
0
6mer
8859-8879
0.001
1
6mer
16981-17001
0.001
1
6mer
13629-13651
0.001
0
6mer
8528-8546
0.001
0
6mer
8697-8713
0.001
0
6mer
7742-7767
0.001
2
6mer
15894-15912
0.001
0
6mer
15055-15072
0.001
0
6mer
3532-3549
0.000
3
6mer
9293-9311
0.000
0
6mer
3593-3608
0.000
0
XLOC_008198
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017353
Biotype: transcript isomorph
Gene id: XLOC_008198
Gene Name: XLOC_008198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-323
0.054
0
6mer
502-528
0.003
0
XLOC_012387
hsa-miR-149-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025558
Biotype: transcript isomorph
Gene id: XLOC_012387
Gene Name: XLOC_012387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-108
0.016
1
7mer
256-278
0.016
0
7mer
918-940
0.009
1
7mer
471-488
0.006
1
7mer
741-765
0.004
1
8mer+wobble
897-914
0.004
1
6mer
609-628
0.002
0
TM4SF19-AS1
hsa-miR-149-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452051
Biotype: antisense
Gene id: ENSG00000235897
Gene Name: TM4SF19-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1776-1802
0.032
0
7mer
1343-1362
0.010
3
6mer
1701-1717
0.006
1
6mer
1776-1799
0.005
1
6mer
1562-1584
0.004
1
6mer
959-977
0.001
2
XLOC_008461
hsa-miR-149-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-768
0.007
1
6mer
322-339
0.006
1
6mer
1018-1028
0.005
1
6mer
5828-5845
0.004
1
6mer
690-700
0.004
1
6mer
1166-1188
0.002
1
6mer
5634-5653
0.002
0
6mer
5411-5428
0.002
1
6mer
2039-2054
0.002
1
6mer
1670-1689
0.002
1
6mer
1591-1610
0.001
0
6mer
2957-2979
0.001
0
6mer
5147-5167
0.001
Not Conserved
7mer
4328-4354
0.001
Not Conserved
6mer
1680-1702
0.001
1
7mer
4034-4060
0.001
0
6mer
5204-5230
0.001
Not Conserved
7mer
4084-4109
0.001
0
7mer
4181-4207
0.001
0
6mer
3061-3086
0.001
0
7mer
4571-4597
0.001
0
7mer
4230-4256
0.001
0
6mer
2165-2181
0.001
0
7mer
3399-3425
0.001
Not Conserved
6mer
3130-3150
0.001
0
6mer
1846-1863
0.001
Not Conserved
8mer
3642-3669
0.000
Not Conserved
6mer
3305-3330
0.000
0
7mer
4621-4646
0.000
Not Conserved
7mer
3985-4011
0.000
Not Conserved
8mer
3789-3816
0.000
Not Conserved
7mer
3497-3522
0.000
Not Conserved
7mer
3936-3962
0.000
Not Conserved
7mer
3887-3913
0.000
Not Conserved
7mer
3353-3378
0.000
Not Conserved
7mer
3740-3766
0.000
Not Conserved
7mer
4377-4403
0.000
Not Conserved
7mer
4523-4548
0.000
Not Conserved
7mer
4474-4499
0.000
Not Conserved
7mer
3838-3864
0.000
Not Conserved
7mer
4426-4452
0.000
Not Conserved
6mer
3199-3219
0.000
0
7mer
3593-3619
0.000
Not Conserved
7mer
3545-3570
0.000
Not Conserved
7mer
3692-3717
0.000
Not Conserved
6mer
4132-4158
0.000
Not Conserved
8mer+mismatch
3803-3820
0.000
Not Conserved
8mer+mismatch
3656-3673
0.000
Not Conserved
6mer
3171-3194
0.000
0
8mer+mismatch
3186-3212
0.000
Not Conserved
XLOC_013188
hsa-miR-149-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026757
Biotype: transcript isomorph
Gene id: XLOC_013188
Gene Name: XLOC_013188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-653
0.033
0
8mer
71-87
0.011
Not Conserved
8mer
619-635
0.008
0
6mer
1066-1089
0.003
1
6mer
78-104
0.002
Not Conserved
NPPA-AS1
hsa-miR-149-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000400892
Biotype: antisense
Gene id: ENSG00000242349
Gene Name: NPPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
690-711
0.053
10
6mer
212-233
0.004
1
GMDS-AS1
hsa-miR-149-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532564
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1161-1182
0.043
2
6mer
1326-1341
0.014
8
XLOC_010769
hsa-miR-149-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1411-1429
0.046
1
6mer
2046-2062
0.010
1
XLOC_008558
hsa-miR-149-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018282
Biotype: transcript isomorph
Gene id: XLOC_008558
Gene Name: XLOC_008558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-262
0.056
1
RP11-440G9.1
hsa-miR-149-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447311
Biotype: lincRNA
Gene id: ENSG00000236366
Gene Name: RP11-440G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.047
1
6mer
20-46
0.006
1
6mer
61-81
0.004
1
XLOC_012009
hsa-miR-149-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025055
Biotype: transcript isomorph
Gene id: XLOC_012009
Gene Name: XLOC_012009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-50
0.056
0
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