LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-94I2.4
hsa-miR-149-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617309
Biotype: lincRNA
Gene id: ENSG00000274372
Gene Name: RP11-94I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-54
0.029
0
9mer
64-82
0.019
Not Conserved
6mer
332-354
0.006
0
6mer
13-39
0.006
0
PHEX-AS1
hsa-miR-149-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424650
Biotype: antisense
Gene id: ENSG00000224204
Gene Name: PHEX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1506-1523
0.041
1
7mer
47-71
0.010
1
7mer
1392-1412
0.005
3
6mer
1510-1533
0.002
1
6mer
718-739
0.002
1
XLOC_012981
hsa-miR-149-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1000-1024
0.018
0
6mer
2705-2725
0.015
1
6mer
420-447
0.010
1
7mer
754-779
0.008
0
6mer
125-145
0.006
0
6mer
37-58
0.002
Not Conserved
C21orf90
hsa-miR-149-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2272-2292
0.023
1
7mer
1892-1913
0.015
0
8mer
1753-1778
0.010
1
6mer
1741-1760
0.006
1
6mer
1948-1973
0.002
0
6mer
719-744
0.002
1
6mer
694-712
0.002
1
RP11-893F2.6
hsa-miR-149-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000514468
Biotype: lincRNA
Gene id: ENSG00000251085
Gene Name: RP11-893F2.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-57
0.059
3
XXyac-YX155B6.5
hsa-miR-149-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595367
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-512
0.045
2
7mer
199-223
0.014
1
AC012594.1
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610954
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
774-790
0.021
0
7mer
90-112
0.015
0
9mer
814-831
0.009
0
6mer
758-783
0.006
1
7mer
818-833
0.004
Not Conserved
6mer
57-75
0.004
1
XLOC_000191
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-45
0.023
1
6mer
158-176
0.020
1
6mer
429-448
0.016
1
AC022007.5
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000383808
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
226-249
0.026
0
7mer
1176-1192
0.012
0
7mer
272-287
0.007
0
6mer
1477-1493
0.006
0
7mer
237-252
0.005
Not Conserved
6mer
458-477
0.003
0
LINC01087
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431979
Biotype: lincRNA
Gene id: ENSG00000224559
Gene Name: LINC01087
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3404-3426
0.059
1
RP11-216M21.7
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-323
0.024
0
6mer
363-384
0.015
0
6mer
1610-1631
0.008
0
6mer
1225-1248
0.007
0
6mer
1171-1191
0.002
0
6mer
1182-1199
0.002
0
RP11-513I15.6
hsa-miR-149-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-45
0.039
6
8mer
4512-4527
0.005
2
7mer
3276-3301
0.003
1
7mer
4503-4524
0.003
1
6mer
6620-6636
0.002
0
6mer
6456-6470
0.002
1
6mer
2153-2179
0.002
2
6mer
3603-3625
0.001
1
6mer
3742-3758
0.001
1
6mer
2168-2191
0.000
Not Conserved
XLOC_014082
hsa-miR-149-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029141
Biotype: transcript isomorph
Gene id: XLOC_014082
Gene Name: XLOC_014082
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-118
0.055
0
6mer
98-118
0.004
0
MEG3
hsa-miR-149-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000452120
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-462
0.039
3
6mer
3480-3492
0.003
2
7mer
3594-3607
0.003
3
6mer
2796-2818
0.003
2
6mer
2304-2324
0.002
6
6mer
1678-1693
0.002
2
7mer
2463-2483
0.002
1
6mer
3587-3602
0.002
1
8mer
3502-3520
0.002
0
6mer
2506-2525
0.000
2
PCA3
hsa-miR-149-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_015342.1
Biotype: antisense
Gene id: NR_015342.1 (gene)
Gene Name: PCA3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1189-1204
0.047
2
7mer
1309-1324
0.004
2
6mer
3177-3199
0.004
4
7mer
2974-3000
0.003
Not Conserved
FAM66C
hsa-miR-149-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544214
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1963-1979
0.047
1
7mer
251-275
0.009
0
6mer
608-634
0.003
0
AC008440.10
hsa-miR-149-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000422045
Biotype: lincRNA
Gene id: ENSG00000232324
Gene Name: AC008440.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-404
0.033
1
8mer
328-355
0.017
1
6mer
188-203
0.004
1
7mer
381-401
0.004
1
RP11-661A12.4
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517300
Biotype: antisense
Gene id: ENSG00000254144
Gene Name: RP11-661A12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-122
0.058
1
RP11-54O7.17
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606034
Biotype: lincRNA
Gene id: ENSG00000272512
Gene Name: RP11-54O7.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-315
0.012
0
7mer
263-279
0.005
1
7mer
883-905
0.004
0
7mer
422-444
0.004
0
7mer
2035-2061
0.004
0
7mer
200-225
0.004
0
7mer
554-576
0.004
0
7mer
356-375
0.004
0
7mer
752-773
0.003
0
7mer
686-709
0.003
0
7mer
817-840
0.002
0
8mer
1887-1912
0.002
0
6mer
1939-1959
0.002
Not Conserved
6mer
488-510
0.001
Not Conserved
6mer
620-642
0.001
0
7mer
710-735
0.001
0
7mer
841-866
0.000
Not Conserved
XLOC_004804
hsa-miR-149-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3438-3463
0.041
1
6mer
4842-4867
0.008
1
6mer
4707-4729
0.006
1
6mer
4874-4892
0.003
0
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