LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LOC285819
hsa-miR-148b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038992.1
Biotype: antisense
Gene id: NR_038992.1 (gene)
Gene Name: LOC285819
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-162
0.025
1
RP11-87E22.1
hsa-miR-148b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522805
Biotype: sense_intronic
Gene id: ENSG00000253142
Gene Name: RP11-87E22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-460
0.009
1
6mer
337-355
0.006
3
6mer
183-198
0.005
1
7mer
156-174
0.005
0
CTD-2396E7.9
hsa-miR-148b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599292
Biotype: antisense
Gene id: ENSG00000268203
Gene Name: CTD-2396E7.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-287
0.025
0
XLOC_009139
hsa-miR-148b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019306
Biotype: transcript isomorph
Gene id: XLOC_009139
Gene Name: XLOC_009139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
167-175
0.025
2
RP11-507K2.2
hsa-miR-148b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555444
Biotype: antisense
Gene id: ENSG00000258983
Gene Name: RP11-507K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-436
0.025
1
RP11-279O17.2
hsa-miR-148b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562361
Biotype: lincRNA
Gene id: ENSG00000260003
Gene Name: RP11-279O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-246
0.020
1
6mer
37-58
0.004
2
LINC00475
hsa-miR-148b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417983
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-254
0.025
0
AC073043.1
hsa-miR-148b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597051
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-200
0.011
2
6mer
393-402
0.006
1
6mer
335-355
0.004
1
6mer
615-626
0.003
Not Conserved
CTD-3216D2.5
hsa-miR-148b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609218
Biotype: sense_intronic
Gene id: ENSG00000272945
Gene Name: CTD-3216D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.016
1
7mer
278-299
0.009
1
RP5-984P4.6
hsa-miR-148b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622757
Biotype: lincRNA
Gene id: ENSG00000278041
Gene Name: RP5-984P4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3537-3557
0.015
2
7mer
2912-2922
0.006
1
6mer
492-513
0.004
2
RP11-434I12.3
hsa-miR-148b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519134
Biotype: lincRNA
Gene id: ENSG00000253339
Gene Name: RP11-434I12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-222
0.019
3
6mer
308-324
0.006
1
RP11-171G2.1
hsa-miR-148b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583916
Biotype: antisense
Gene id: ENSG00000264196
Gene Name: RP11-171G2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-176
0.018
1
7mer
520-534
0.007
1
XLOC_010996
hsa-miR-148b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023093
Biotype: transcript isomorph
Gene id: XLOC_010996
Gene Name: XLOC_010996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6195-6216
0.014
1
7mer
3570-3589
0.006
1
6mer
4691-4703
0.002
Not Conserved
6mer
1299-1323
0.002
1
6mer
3506-3525
0.001
Not Conserved
RP11-731J8.2
hsa-miR-148b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6547-6569
0.012
1
6mer
737-753
0.005
1
6mer
3696-3716
0.002
2
6mer
5103-5126
0.002
2
6mer
2248-2266
0.002
1
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