LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010704
hsa-miR-148b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022093
Biotype: transcript isomorph
Gene id: XLOC_010704
Gene Name: XLOC_010704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
385-406
0.014
0
6mer
38-48
0.011
0
XLOC_009608
hsa-miR-148b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020155
Biotype: transcript isomorph
Gene id: XLOC_009608
Gene Name: XLOC_009608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-912
0.025
1
FRMD6-AS2
hsa-miR-148b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557625
Biotype: lincRNA
Gene id: ENSG00000258537
Gene Name: FRMD6-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-151
0.025
3
AC073043.1
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413557
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-23
0.013
2
6mer
216-225
0.006
1
6mer
158-178
0.006
1
LINC00648
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555985
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1934-1951
0.010
3
7mer
2424-2448
0.009
2
6mer
2815-2836
0.006
2
EHMT1-IT1
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024341.1
Biotype: sense
Gene id: NR_024341.1 (gene)
Gene Name: EHMT1-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1403
0.014
2
7mer
141-162
0.007
1
7mer
135-152
0.004
0
XLOC_010681
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022079
Biotype: transcript isomorph
Gene id: XLOC_010681
Gene Name: XLOC_010681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
467-492
0.025
1
XLOC_011951
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024666
Biotype: transcript isomorph
Gene id: XLOC_011951
Gene Name: XLOC_011951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
457-479
0.025
6
XLOC_012397
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025572
Biotype: transcript isomorph
Gene id: XLOC_012397
Gene Name: XLOC_012397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
818-832
0.009
1
7mer
596-617
0.009
1
6mer
138-150
0.005
1
6mer
1122-1133
0.003
Not Conserved
XLOC_004366
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11585-11603
0.012
0
7mer
9685-9693
0.004
1
6mer
10999-11014
0.003
1
6mer
11440-11465
0.002
0
6mer
2546-2563
0.002
0
6mer
1645-1661
0.002
1
RP11-479G22.8
hsa-miR-148b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609742
Biotype: lincRNA
Gene id: ENSG00000273038
Gene Name: RP11-479G22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1903-1921
0.011
2
6mer
1683-1702
0.006
1
6mer
658-671
0.004
1
6mer
1530-1550
0.004
1
AC091729.9
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110069.1
Biotype: antisense
Gene id: NR_110069.1 (gene)
Gene Name: AC091729.9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-790
0.020
0
6mer
237-255
0.004
0
6mer
819-832
0.001
0
MIR7515HG
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589597
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-568
0.020
1
7mer
251-273
0.004
3
MIR7515HG
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455317
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-65
0.025
1
RP11-314C16.1
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038979.1
Biotype: lincRNA
Gene id: NR_038979.1 (gene)
Gene Name: RP11-314C16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2072-2087
0.020
1
6mer
1971-1988
0.005
1
KB-1592A4.15
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000420508
Biotype: lincRNA
Gene id: ENSG00000197210
Gene Name: KB-1592A4.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-167
0.024
0
6mer
1732-1752
0.001
0
LINC00301
hsa-miR-148b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000320202
Biotype: lincRNA
Gene id: ENSG00000181995
Gene Name: LINC00301
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-448
0.014
0
6mer
732-749
0.007
2
6mer
356-366
0.004
1
FRMD6-AS1
hsa-miR-148b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617151
Biotype: antisense
Gene id: ENSG00000273888
Gene Name: FRMD6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-661
0.020
1
6mer
699-722
0.005
2
MIR145
hsa-miR-148b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602315
Biotype: lincRNA
Gene id: ENSG00000269936
Gene Name: MIR145
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1608-1627
0.009
0
7mer
1909-1934
0.009
3
6mer
622-645
0.003
2
6mer
288-307
0.003
2
AC024132.1
hsa-miR-148b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382007
Biotype: lincRNA
Gene id: ENSG00000205830
Gene Name: AC024132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
115-132
0.009
8
6mer
2247-2264
0.006
2
6mer
2466-2480
0.006
1
6mer
1684-1696
0.004
1
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