LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008826
hsa-miR-148b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-79
0.019
1
7mer
425-435
0.007
0
LOC101927967
hsa-miR-148b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110288.1
Biotype: lincRNA
Gene id: NR_110288.1 (gene)
Gene Name: LOC101927967
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
382-393
0.008
2
6mer
506-516
0.007
1
6mer
527-551
0.006
1
6mer
417-437
0.004
1
SBF2-AS1
hsa-miR-148b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499953
Biotype: antisense
Gene id: ENSG00000246273
Gene Name: SBF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-843
0.025
0
C3orf65
hsa-miR-148b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470754
Biotype: antisense
Gene id: ENSG00000163915
Gene Name: C3orf65
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-120
0.025
1
XLOC_000927
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001601
Biotype: transcript isomorph
Gene id: XLOC_000927
Gene Name: XLOC_000927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
70-77
0.020
8
7mer
614-633
0.005
1
SMAD9-IT1
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437983
Biotype: sense_intronic
Gene id: ENSG00000236711
Gene Name: SMAD9-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-95
0.025
0
RP11-19N8.7
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562827
Biotype: lincRNA
Gene id: ENSG00000261682
Gene Name: RP11-19N8.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-726
0.020
2
6mer
574-590
0.005
Not Conserved
RP11-541N10.3
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568017
Biotype: sense_overlapping
Gene id: ENSG00000260461
Gene Name: RP11-541N10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1011-1035
0.008
1
6mer
257-273
0.007
3
7mer
2013-2032
0.006
1
6mer
383-403
0.004
1
RP11-23P13.6
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564432
Biotype: antisense
Gene id: ENSG00000174171
Gene Name: RP11-23P13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-529
0.025
1
SATB1-AS1
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595388
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
661-683
0.017
9
6mer
221-229
0.009
6
RP11-613D13.4
hsa-miR-148b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526408
Biotype: sense_overlapping
Gene id: ENSG00000254409
Gene Name: RP11-613D13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-634
0.025
1
RP11-301J16.7
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000450212
Biotype: antisense
Gene id: ENSG00000226619
Gene Name: RP11-301J16.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
118-126
0.025
1
RP11-407N17.5
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000605298
Biotype: antisense
Gene id: ENSG00000258940
Gene Name: RP11-407N17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-304
0.014
0
6mer
442-446
0.011
6
CTD-2293H3.1
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588369
Biotype: sense_intronic
Gene id: ENSG00000267672
Gene Name: CTD-2293H3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1065-1087
0.010
0
7mer
278-300
0.009
1
7mer
606-611
0.006
0
RP11-144L1.4
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426251
Biotype: antisense
Gene id: ENSG00000236656
Gene Name: RP11-144L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-74
0.017
2
6mer
137-156
0.008
1
RP11-691G17.1
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-646
0.025
0
CTC-232P5.3
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587759
Biotype: antisense
Gene id: ENSG00000267262
Gene Name: CTC-232P5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-506
0.025
1
GDNF-AS1
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514532
Biotype: lincRNA
Gene id: ENSG00000248587
Gene Name: GDNF-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2456-2480
0.017
2
6mer
239-250
0.008
3
KCNK15-AS1
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000419931
Biotype: antisense
Gene id: ENSG00000244558
Gene Name: KCNK15-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-404
0.019
0
7mer
434-457
0.006
0
MIR4453
hsa-miR-148b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000604157
Biotype: lincRNA
Gene id: ENSG00000268471
Gene Name: MIR4453
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-91
0.017
5
6mer
2617-2638
0.008
3
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