LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LINC01088
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513153
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
667-680
0.026
10
LINC00664
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3180-3193
0.013
1
7mer
2496-2520
0.007
1
6mer
2763-2775
0.006
1
RP11-335O4.1
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537732
Biotype: lincRNA
Gene id: ENSG00000256077
Gene Name: RP11-335O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-143
0.025
2
LINC00662
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
261-272
0.025
0
MIR7515HG
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456028
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-62
0.025
1
RP11-1000B6.8
hsa-miR-148b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000576873
Biotype: antisense
Gene id: ENSG00000262728
Gene Name: RP11-1000B6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
444-467
0.021
0
6mer
871-891
0.004
1
XLOC_013703
hsa-miR-148b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
145-167
0.025
0
CASC2
hsa-miR-148b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414722
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
616-622
0.025
4
XLOC_011006
hsa-miR-148b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022727
Biotype: transcript isomorph
Gene id: XLOC_011006
Gene Name: XLOC_011006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-171
0.016
4
7mer
677-699
0.010
0
RP11-340I6.3
hsa-miR-148b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424036
Biotype: lincRNA
Gene id: ENSG00000227305
Gene Name: RP11-340I6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-652
0.025
Not Conserved
CTA-929C8.8
hsa-miR-148b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000413244
Biotype: lincRNA
Gene id: ENSG00000230051
Gene Name: CTA-929C8.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-347
0.021
1
6mer
188-209
0.004
1
RP11-17M15.1
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563407
Biotype: lincRNA
Gene id: ENSG00000260847
Gene Name: RP11-17M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-726
0.020
2
6mer
574-590
0.005
Not Conserved
CTA-331P3.1
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569685
Biotype: antisense
Gene id: ENSG00000260188
Gene Name: CTA-331P3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
78-103
0.007
1
6mer
1332-1358
0.006
1
6mer
975-1002
0.005
1
6mer
314-338
0.005
1
6mer
505-522
0.002
Not Conserved
RP11-277P12.20
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500682
Biotype: antisense
Gene id: ENSG00000245648
Gene Name: RP11-277P12.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2280-2303
0.019
Not Conserved
6mer
2631-2650
0.007
2
ST7-AS2
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434993
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-103
0.025
0
RP11-1046B16.3
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000611191
Biotype: sense_intronic
Gene id: ENSG00000273797
Gene Name: RP11-1046B16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-426
0.025
3
RP11-556N4.1
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000438151
Biotype: antisense
Gene id: ENSG00000229717
Gene Name: RP11-556N4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1548-1558
0.022
1
6mer
653-672
0.003
1
AC006129.2
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595649
Biotype: lincRNA
Gene id: ENSG00000268027
Gene Name: AC006129.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
533-555
0.021
0
6mer
176-187
0.005
Not Conserved
RP1-228P16.8
hsa-miR-148b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-637
0.017
0
7mer
174-200
0.009
1
XLOC_011368
hsa-miR-148b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023532
Biotype: transcript isomorph
Gene id: XLOC_011368
Gene Name: XLOC_011368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1238-1253
0.012
3
7mer
837-863
0.006
2
6mer
3465-3482
0.005
1
6mer
850-875
0.003
7
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