LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-431M3.2
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518178
Biotype: lincRNA
Gene id: ENSG00000254033
Gene Name: RP11-431M3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.017
0
7mer
127-136
0.009
0
XLOC_012393
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025566
Biotype: transcript isomorph
Gene id: XLOC_012393
Gene Name: XLOC_012393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
445-469
0.006
4
6mer
3948-3963
0.005
0
6mer
481-502
0.005
3
6mer
164-182
0.005
0
6mer
44-61
0.004
1
LINC00342
hsa-miR-148b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103734.1
Biotype: lincRNA
Gene id: NR_103734.1 (gene)
Gene Name: LINC00342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1501-1520
0.008
0
6mer
3073-3083
0.008
0
6mer
2263-2284
0.004
0
7mer
913-921
0.003
0
6mer
1024-1034
0.002
0
6mer
1170-1178
0.001
Not Conserved
RP11-800A3.4
hsa-miR-148b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000565433
Biotype: sense_overlapping
Gene id: ENSG00000260401
Gene Name: RP11-800A3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2821-2845
0.014
1
8mer+mismatch
393-411
0.010
5
6mer
1010-1024
0.002
1
RP11-12M5.1
hsa-miR-148b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423879
Biotype: lincRNA
Gene id: ENSG00000243062
Gene Name: RP11-12M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-469
0.026
2
XLOC_008756
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018897
Biotype: transcript isomorph
Gene id: XLOC_008756
Gene Name: XLOC_008756
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
175-190
0.026
0
AC159540.1
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604397
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-580
0.020
0
6mer
407-429
0.005
0
XLOC_002211
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002757
Biotype: transcript isomorph
Gene id: XLOC_002211
Gene Name: XLOC_002211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-244
0.026
7
MIR146A
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517927
Biotype: lincRNA
Gene id: ENSG00000253522
Gene Name: MIR146A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
227-253
0.011
10
7mer
1797-1814
0.009
2
7mer
337-363
0.006
Not Conserved
CTC-340I23.2
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520705
Biotype: antisense
Gene id: ENSG00000254163
Gene Name: CTC-340I23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-193
0.022
2
6mer
256-279
0.003
0
RP11-363D14.1
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425578
Biotype: antisense
Gene id: ENSG00000235480
Gene Name: RP11-363D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-247
0.026
7
RP11-303E16.7
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501068
Biotype: lincRNA
Gene id: ENSG00000245059
Gene Name: RP11-303E16.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1016
0.026
1
LINC00562
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000566385
Biotype: lincRNA
Gene id: ENSG00000260388
Gene Name: LINC00562
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
835-860
0.020
0
6mer
294-311
0.006
0
DAB1-AS1
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588227
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
651-671
0.011
0
6mer
28-46
0.008
3
6mer
91-113
0.007
2
RP11-1000B6.8
hsa-miR-148b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000613931
Biotype: antisense
Gene id: ENSG00000262728
Gene Name: RP11-1000B6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
353-376
0.026
0
XLOC_008408
hsa-miR-148b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018133
Biotype: transcript isomorph
Gene id: XLOC_008408
Gene Name: XLOC_008408
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-211
0.026
2
MIR4534
hsa-miR-148b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53870-53890
0.005
2
8mer
11378-11385
0.005
2
6mer
35210-35234
0.002
8
6mer
21604-21630
0.002
1
6mer
24565-24583
0.002
1
6mer
10789-10805
0.002
1
6mer
11295-11316
0.001
1
7mer
23051-23073
0.001
2
7mer
33439-33456
0.001
1
6mer
6307-6320
0.001
1
6mer
25897-25920
0.001
1
6mer
42142-42168
0.001
0
6mer
30212-30229
0.001
0
RP13-444H2.1
hsa-miR-148b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000603464
Biotype: lincRNA
Gene id: ENSG00000271564
Gene Name: RP13-444H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-571
0.016
1
6mer
804-822
0.010
1
DARS-AS1
hsa-miR-148b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594219
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1378-1391
0.021
1
6mer
304-326
0.004
3
XLOC_000910
hsa-miR-148b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001575
Biotype: transcript isomorph
Gene id: XLOC_000910
Gene Name: XLOC_000910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1127-1140
0.016
1
6mer
842-858
0.006
2
6mer
825-838
0.003
1
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