LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-400K9.4
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-250
0.019
1
6mer
1794-1808
0.007
1
MIR7515HG
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593202
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-444
0.021
1
7mer
127-149
0.006
3
AC008281.1
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438659
Biotype: lincRNA
Gene id: ENSG00000228909
Gene Name: AC008281.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-109
0.023
1
6mer
532-555
0.003
0
LINC01320
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453774
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-569
0.021
0
6mer
334-346
0.005
0
XLOC_009582
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020142
Biotype: transcript isomorph
Gene id: XLOC_009582
Gene Name: XLOC_009582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1206-1220
0.019
3
7mer
552-567
0.007
1
XLOC_007808
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3507-3526
0.008
1
6mer
7159-7181
0.007
4
7mer
4972-4992
0.003
Not Conserved
6mer
6257-6276
0.003
3
6mer
1127-1137
0.002
2
6mer
5516-5536
0.002
0
6mer
2226-2245
0.002
1
RP11-93B14.5
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_024470.1
Biotype: antisense
Gene id: NR_024470.1 (gene)
Gene Name: RP11-93B14.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1272-1299
0.017
4
6mer
668-691
0.005
2
7mer
573-589
0.004
5
RP11-586K12.4
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561479
Biotype: lincRNA
Gene id: ENSG00000260845
Gene Name: RP11-586K12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-151
0.020
2
6mer
277-293
0.006
0
ZBTB20-AS2
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478301
Biotype: lincRNA
Gene id: ENSG00000241295
Gene Name: ZBTB20-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-207
0.026
7
LINC00343
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046391.1
Biotype: lincRNA
Gene id: NR_046391.1 (gene)
Gene Name: LINC00343
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-128
0.023
0
6mer
526-551
0.003
0
LINC00473
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455853
Biotype: lincRNA
Gene id: ENSG00000223414
Gene Name: LINC00473
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-109
0.013
1
6mer
1489-1515
0.006
5
7mer
525-541
0.004
1
6mer
1023-1042
0.003
3
LINC00301
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527161
Biotype: lincRNA
Gene id: ENSG00000181995
Gene Name: LINC00301
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-440
0.015
0
6mer
629-646
0.007
2
6mer
348-358
0.004
1
RP11-712P20.2
hsa-miR-148b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593078
Biotype: sense_intronic
Gene id: ENSG00000266965
Gene Name: RP11-712P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-708
0.022
1
6mer
534-550
0.004
0
SLCO4A1-AS1
hsa-miR-148b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433126
Biotype: antisense
Gene id: ENSG00000232803
Gene Name: SLCO4A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1268-1295
0.017
4
6mer
664-687
0.005
2
7mer
569-585
0.004
5
RP11-709D24.8
hsa-miR-148b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612995
Biotype: sense_intronic
Gene id: ENSG00000278434
Gene Name: RP11-709D24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-442
0.022
1
6mer
769-778
0.002
0
6mer
419-442
0.002
0
RP11-95D17.1
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602458
Biotype: lincRNA
Gene id: ENSG00000269973
Gene Name: RP11-95D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3000-3019
0.025
0
6mer
1640-1655
0.001
1
XLOC_011800
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024295
Biotype: transcript isomorph
Gene id: XLOC_011800
Gene Name: XLOC_011800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1016
0.026
1
PPP3CB-AS1
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595935
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
573-584
0.023
6
6mer
82-100
0.003
0
STK4-AS1
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000445571
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
478-492
0.026
0
MEG3
hsa-miR-148b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000452120
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4400-4422
0.025
1
6mer
2851-2871
0.001
1
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