LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LOC101927053
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110209.1
Biotype: antisense
Gene id: NR_110209.1 (gene)
Gene Name: LOC101927053
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-503
0.016
0
8mer
1786-1811
0.011
0
SEMA6A-AS1
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514214
Biotype: antisense
Gene id: ENSG00000248445
Gene Name: SEMA6A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-478
0.017
0
6mer
721-744
0.009
7
XLOC_004924
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
965-983
0.008
5
7mer
9813-9818
0.008
7
6mer
295-302
0.005
0
6mer
5359-5371
0.003
1
6mer
1801-1824
0.001
1
6mer
8811-8823
0.001
1
XLOC_008152
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017504
Biotype: transcript isomorph
Gene id: XLOC_008152
Gene Name: XLOC_008152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2486-2509
0.015
3
6mer
552-576
0.004
1
6mer
2140-2155
0.004
1
6mer
1762-1772
0.003
2
XLOC_005212
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011164
Biotype: transcript isomorph
Gene id: XLOC_005212
Gene Name: XLOC_005212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2841-2851
0.013
2
8mer
1951-1971
0.008
1
6mer
213-236
0.005
1
RP11-438D8.2
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000507698
Biotype: antisense
Gene id: ENSG00000249417
Gene Name: RP11-438D8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-109
0.026
0
RP11-553L6.5
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1525-1538
0.026
8
XLOC_013010
hsa-miR-148b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1632-1653
0.026
0
RP11-98C1.2
hsa-miR-148b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591103
Biotype: antisense
Gene id: ENSG00000272895
Gene Name: RP11-98C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-500
0.021
1
7mer
487-509
0.005
Not Conserved
RP11-650L12.2
hsa-miR-148b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567141
Biotype: antisense
Gene id: ENSG00000261762
Gene Name: RP11-650L12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1956-1968
0.011
0
7mer
450-468
0.007
1
6mer
1558-1576
0.005
1
6mer
481-506
0.004
1
DARS-AS1
hsa-miR-148b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613688
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-707
0.026
1
XLOC_005284
hsa-miR-148b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011811
Biotype: transcript isomorph
Gene id: XLOC_005284
Gene Name: XLOC_005284
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-349
0.021
0
6mer
66-74
0.006
1
RP11-558A11.1
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563772
Biotype: lincRNA
Gene id: ENSG00000260858
Gene Name: RP11-558A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-49
0.017
1
8mer
411-432
0.009
0
RP11-856M7.1
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562202
Biotype: antisense
Gene id: ENSG00000260779
Gene Name: RP11-856M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3105-3121
0.023
1
6mer
2973-2990
0.003
1
RP11-202I11.2
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447148
Biotype: lincRNA
Gene id: ENSG00000229454
Gene Name: RP11-202I11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-96
0.026
3
XLOC_009740
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020413
Biotype: transcript isomorph
Gene id: XLOC_009740
Gene Name: XLOC_009740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-41
0.026
1
XLOC_004849
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009284
Biotype: transcript isomorph
Gene id: XLOC_004849
Gene Name: XLOC_004849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-50
0.015
1
7mer
704-727
0.006
1
6mer
1603-1625
0.005
1
ST7-AS2
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442719
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-103
0.026
0
XLOC_000973
hsa-miR-148b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001636
Biotype: transcript isomorph
Gene id: XLOC_000973
Gene Name: XLOC_000973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-52
0.026
1
AC004862.6
hsa-miR-148b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605580
Biotype: antisense
Gene id: ENSG00000232667
Gene Name: AC004862.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-89
0.023
1
6mer
190-212
0.003
0
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