LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003999
hsa-miR-148b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007373
Biotype: transcript isomorph
Gene id: XLOC_003999
Gene Name: XLOC_003999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-737
0.016
0
7mer
808-830
0.011
1
LINC01061
hsa-miR-148b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4581-4600
0.013
0
8mer
469-488
0.007
0
6mer
4390-4412
0.004
0
6mer
2290-2308
0.002
0
LINC00238
hsa-miR-148b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000450299
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
220-241
0.013
0
6mer
460-483
0.009
5
7mer
299-314
0.005
0
LINC00575
hsa-miR-148b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000426551
Biotype: lincRNA
Gene id: ENSG00000231782
Gene Name: LINC00575
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-697
0.016
0
7mer
768-790
0.011
1
AL109763.2
hsa-miR-148b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414582
Biotype: lincRNA
Gene id: ENSG00000224141
Gene Name: AL109763.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-158
0.027
1
XLOC_012796
hsa-miR-148b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026469
Biotype: transcript isomorph
Gene id: XLOC_012796
Gene Name: XLOC_012796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-93
0.027
Not Conserved
XLOC_013047
hsa-miR-148b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026830
Biotype: transcript isomorph
Gene id: XLOC_013047
Gene Name: XLOC_013047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-325
0.019
2
6mer
689-698
0.006
1
6mer
1603-1618
0.003
1
DSCAM-IT1
hsa-miR-148b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441910
Biotype: sense_intronic
Gene id: ENSG00000233756
Gene Name: DSCAM-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-42
0.027
0
RP11-363L24.3
hsa-miR-148b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523365
Biotype: antisense
Gene id: ENSG00000253961
Gene Name: RP11-363L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
469-494
0.017
0
6mer
10-22
0.010
1
MAMDC2-AS1
hsa-miR-148b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377178
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-779
0.027
1
RP5-1016A21.1
hsa-miR-148b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613711
Biotype: lincRNA
Gene id: ENSG00000276627
Gene Name: RP5-1016A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-90
0.027
4
NEAT1
hsa-miR-148b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3628-3647
0.012
5
8mer+mismatch
529-551
0.006
2
7mer
2375-2391
0.005
2
6mer
253-271
0.002
1
6mer
1986-2012
0.002
0
XLOC_000191
hsa-miR-148b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
288-304
0.016
1
6mer
304-321
0.011
1
XLOC_008522
hsa-miR-148b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018246
Biotype: transcript isomorph
Gene id: XLOC_008522
Gene Name: XLOC_008522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3487-3501
0.014
6
7mer
3394-3404
0.007
0
6mer
2807-2829
0.003
1
6mer
2284-2311
0.003
4
LINC00326
hsa-miR-148b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434443
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-339
0.022
1
7mer
39-52
0.005
1
XLOC_010987
hsa-miR-148b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022407
Biotype: transcript isomorph
Gene id: XLOC_010987
Gene Name: XLOC_010987
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-54
0.027
1
AC108488.4
hsa-miR-148b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438482
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
848-871
0.027
1
LINC00511
hsa-miR-148b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581549
Biotype: lincRNA
Gene id: ENSG00000227036
Gene Name: LINC00511
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-119
0.008
0
6mer
168-185
0.006
1
7mer
1854-1872
0.005
1
6mer
1700-1714
0.004
2
6mer
628-654
0.004
1
AC010967.3
hsa-miR-148b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418451
Biotype: lincRNA
Gene id: ENSG00000232604
Gene Name: AC010967.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-252
0.019
2
6mer
272-292
0.008
2
PLCE1-AS2
hsa-miR-148b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438899
Biotype: antisense
Gene id: ENSG00000232913
Gene Name: PLCE1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-878
0.014
2
6mer
76-89
0.009
5
6mer
621-645
0.004
0
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