LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
CTB-174D11.1
hsa-miR-148b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508470
Biotype: antisense
Gene id: ENSG00000248222
Gene Name: CTB-174D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-190
0.028
1
LINC01189
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046203.1
Biotype: lincRNA
Gene id: NR_046203.1 (gene)
Gene Name: LINC01189
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-172
0.028
0
RP11-146N18.1
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589376
Biotype: lincRNA
Gene id: ENSG00000267134
Gene Name: RP11-146N18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1316-1340
0.019
1
6mer
670-690
0.009
7
ARHGEF26-AS1
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491862
Biotype: antisense
Gene id: ENSG00000243069
Gene Name: ARHGEF26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-69
0.028
1
RP11-1084I9.1
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557171
Biotype: lincRNA
Gene id: ENSG00000206187
Gene Name: RP11-1084I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-489
0.019
1
7mer
323-338
0.009
1
XLOC_012406
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025579
Biotype: transcript isomorph
Gene id: XLOC_012406
Gene Name: XLOC_012406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
341-346
0.011
1
8mer
632-652
0.007
0
6mer
109-129
0.005
0
6mer
99-121
0.004
0
XLOC_001849
hsa-miR-148b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003102
Biotype: transcript isomorph
Gene id: XLOC_001849
Gene Name: XLOC_001849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1855
0.011
0
7mer
1253-1269
0.008
0
6mer
1108-1116
0.004
1
6mer
632-652
0.004
1
XLOC_013929
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028841
Biotype: transcript isomorph
Gene id: XLOC_013929
Gene Name: XLOC_013929
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-578
0.028
1
XLOC_009804
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020471
Biotype: transcript isomorph
Gene id: XLOC_009804
Gene Name: XLOC_009804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-345
0.028
1
MIR7515HG
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591060
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-35
0.028
1
RP11-420A23.1
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504984
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
611-627
0.028
1
XLOC_005087
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010560
Biotype: transcript isomorph
Gene id: XLOC_005087
Gene Name: XLOC_005087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-255
0.010
1
7mer
553-569
0.009
1
7mer
1847-1865
0.004
1
7mer
546-569
0.004
2
RP11-708B6.2
hsa-miR-148b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532929
Biotype: antisense
Gene id: ENSG00000255028
Gene Name: RP11-708B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-324
0.028
1
LINC00645
hsa-miR-148b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-206
0.027
10
RP11-132N15.3
hsa-miR-148b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423643
Biotype: lincRNA
Gene id: ENSG00000224187
Gene Name: RP11-132N15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
342-367
0.018
10
6mer
234-249
0.009
7
CTD-3224K15.2
hsa-miR-148b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514287
Biotype: lincRNA
Gene id: ENSG00000250635
Gene Name: CTD-3224K15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-12
0.027
9
RAP2C-AS1
hsa-miR-148b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441399
Biotype: antisense
Gene id: ENSG00000232160
Gene Name: RAP2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-173
0.021
Not Conserved
6mer
836-854
0.004
0
6mer
654-669
0.002
Not Conserved
RP11-15M15.1
hsa-miR-148b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432706
Biotype: antisense
Gene id: ENSG00000223492
Gene Name: RP11-15M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-163
0.027
1
AC073043.1
hsa-miR-148b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454153
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-120
0.014
2
6mer
313-322
0.005
1
6mer
255-275
0.005
1
6mer
514-525
0.003
Not Conserved
ZNF529-AS1
hsa-miR-148b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000494214
Biotype: antisense
Gene id: ENSG00000233527
Gene Name: ZNF529-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-307
0.019
0
7mer
161-176
0.008
0
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