LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP13-36G14.4
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603952
Biotype: sense_intronic
Gene id: ENSG00000270223
Gene Name: RP13-36G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-113
0.028
0
ZEB2-AS1
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427278
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
964-984
0.023
7
6mer
984-992
0.005
6
XLOC_010972
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022677
Biotype: transcript isomorph
Gene id: XLOC_010972
Gene Name: XLOC_010972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
521-548
0.014
1
6mer
302-327
0.014
1
HCP5
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414046
Biotype: sense_overlapping
Gene id: ENSG00000206337
Gene Name: HCP5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1054-1068
0.015
Not Conserved
7mer
2253-2269
0.013
0
PLCE1-AS2
hsa-miR-148b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601781
Biotype: antisense
Gene id: ENSG00000232913
Gene Name: PLCE1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-389
0.015
2
7mer
180-197
0.013
1
LINC00343
hsa-miR-148b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596398
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-368
0.024
0
6mer
766-791
0.004
0
XLOC_013276
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027716
Biotype: transcript isomorph
Gene id: XLOC_013276
Gene Name: XLOC_013276
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1276-1291
0.024
0
6mer
192-201
0.004
Not Conserved
RP11-517I3.1
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512500
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-568
0.028
9
XLOC_011329
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-119
0.017
1
7mer
188-215
0.011
1
CRYM-AS1
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000444326
Biotype: lincRNA
Gene id: ENSG00000189149
Gene Name: CRYM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-66
0.011
1
6mer
199-220
0.007
4
6mer
1883-1906
0.006
0
6mer
1791-1804
0.004
1
RP1-40E16.2
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433761
Biotype: lincRNA
Gene id: ENSG00000229282
Gene Name: RP1-40E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-374
0.028
1
C21orf88
hsa-miR-148b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000489821
Biotype: antisense
Gene id: ENSG00000184809
Gene Name: C21orf88
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-51
0.021
1
6mer
859-878
0.007
1
RP11-123O1.1
hsa-miR-148b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447158
Biotype: lincRNA
Gene id: ENSG00000233689
Gene Name: RP11-123O1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-318
0.028
2
XLOC_012142
hsa-miR-148b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025162
Biotype: transcript isomorph
Gene id: XLOC_012142
Gene Name: XLOC_012142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-589
0.028
0
RP11-485G4.2
hsa-miR-148b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4009-4026
0.020
5
6mer
3857-3876
0.004
0
6mer
3546-3550
0.003
0
6mer
3003-3025
0.001
1
TUG1
hsa-miR-148b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602971
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-585
0.024
6
6mer
1032-1044
0.004
1
PCBP1-AS1
hsa-miR-148b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439670
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
711-725
0.014
3
7mer
436-462
0.014
1
RP11-631N16.2
hsa-miR-148b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8459-8483
0.009
1
8mer
5084-5099
0.006
1
7mer
1405-1426
0.005
4
6mer
3684-3704
0.003
3
6mer
5521-5528
0.002
2
6mer
3085-3108
0.002
1
PWAR6
hsa-miR-148b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-733
0.018
1
6mer
190-209
0.007
1
6mer
1854-1872
0.003
1
CTC-529L17.1
hsa-miR-148b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512237
Biotype: lincRNA
Gene id: ENSG00000249169
Gene Name: CTC-529L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
721-738
0.028
1
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