LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-300A12.2
hsa-miR-148b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567616
Biotype: lincRNA
Gene id: ENSG00000259814
Gene Name: RP11-300A12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1261-1275
0.020
1
6mer
954-978
0.005
1
6mer
871-897
0.004
1
RP1-78O14.1
hsa-miR-148b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550268
Biotype: lincRNA
Gene id: ENSG00000257894
Gene Name: RP1-78O14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1426-1444
0.012
1
7mer
578-605
0.008
0
6mer
1686-1697
0.005
3
6mer
1103-1119
0.003
1
XLOC_005377
hsa-miR-148b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012543
Biotype: transcript isomorph
Gene id: XLOC_005377
Gene Name: XLOC_005377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
454-480
0.023
5
6mer
569-582
0.006
1
RP11-798G7.6
hsa-miR-148b-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587078
Biotype: lincRNA
Gene id: ENSG00000267198
Gene Name: RP11-798G7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-211
0.028
5
RP11-560A15.3
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000366097
Biotype: lincRNA
Gene id: ENSG00000203266
Gene Name: RP11-560A15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-443
0.028
2
XLOC_004323
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4803-4825
0.008
1
7mer
303-323
0.006
Not Conserved
7mer
2229-2245
0.006
1
6mer
708-725
0.003
0
6mer
978-999
0.003
Not Conserved
6mer
2841-2859
0.002
2
RP11-210M15.2
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559008
Biotype: lincRNA
Gene id: ENSG00000259495
Gene Name: RP11-210M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6489-6502
0.014
6
7mer
6848-6874
0.007
1
7mer
3822-3847
0.003
1
6mer
4225-4249
0.002
1
6mer
1319-1332
0.001
Not Conserved
XLOC_011616
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023843
Biotype: transcript isomorph
Gene id: XLOC_011616
Gene Name: XLOC_011616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-120
0.023
1
6mer
3702-3713
0.003
1
6mer
3320-3336
0.002
1
RP11-1000B6.8
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000613733
Biotype: antisense
Gene id: ENSG00000262728
Gene Name: RP11-1000B6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
460-483
0.028
0
RP11-793B23.1
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506420
Biotype: lincRNA
Gene id: ENSG00000250034
Gene Name: RP11-793B23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
177-196
0.028
1
LINC00547
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612438
Biotype: lincRNA
Gene id: ENSG00000275226
Gene Name: LINC00547
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2892-2909
0.019
0
6mer
2230-2250
0.003
1
6mer
979-999
0.002
1
6mer
1160-1178
0.002
0
6mer
1640-1661
0.002
0
6mer
1160-1185
0.001
0
AC009502.4
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607654
Biotype: lincRNA
Gene id: ENSG00000227308
Gene Name: AC009502.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1305-1325
0.021
1
7mer
1316-1334
0.007
1
RP11-139H15.7
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616335
Biotype: sense_intronic
Gene id: ENSG00000274765
Gene Name: RP11-139H15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-63
0.028
1
RP11-424M21.1
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513617
Biotype: lincRNA
Gene id: ENSG00000249184
Gene Name: RP11-424M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-586
0.023
Not Conserved
7mer
226-244
0.006
Not Conserved
CACNA1C-AS1
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501371
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-91
0.015
3
6mer
2105-2128
0.005
8
6mer
192-207
0.003
2
6mer
1154-1177
0.003
4
6mer
1035-1055
0.002
1
7mer
1115-1141
0.001
5
CTD-2207P18.1
hsa-miR-148b-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554552
Biotype: lincRNA
Gene id: ENSG00000258425
Gene Name: CTD-2207P18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-132
0.023
10
6mer
455-474
0.005
1
SGMS1-AS1
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-237
0.015
Not Conserved
7mer
3426-3441
0.004
3
6mer
727-739
0.003
1
7mer
6253-6275
0.002
0
6mer
4922-4931
0.002
3
6mer
4627-4646
0.002
1
6mer
10497-10522
0.001
Not Conserved
RP11-474D1.3
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-276
0.010
0
7mer
1779-1795
0.006
1
7mer
2068-2086
0.005
0
6mer
1096-1115
0.003
2
6mer
2426-2445
0.003
0
6mer
920-944
0.002
0
MIR7515HG
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587748
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-51
0.028
1
AC007251.2
hsa-miR-148b-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000611915
Biotype: lincRNA
Gene id: ENSG00000277527
Gene Name: AC007251.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-577
0.028
1
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