LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-856F16.2
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545958
Biotype: antisense
Gene id: ENSG00000256469
Gene Name: RP11-856F16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
488-509
0.029
1
RP11-474D1.3
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
620-634
0.007
0
6mer
53-74
0.006
1
7mer
2137-2153
0.005
1
7mer
2426-2444
0.003
0
6mer
3706-3729
0.003
1
6mer
1454-1473
0.002
2
6mer
1278-1302
0.002
0
6mer
2784-2803
0.001
0
AC004540.4
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451368
Biotype: antisense
Gene id: ENSG00000225792
Gene Name: AC004540.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-284
0.029
10
XLOC_011198
hsa-miR-148b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023896
Biotype: transcript isomorph
Gene id: XLOC_011198
Gene Name: XLOC_011198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-724
0.017
1
7mer
487-507
0.011
1
PRMT5-AS1
hsa-miR-148b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000590290
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-576
0.021
11
6mer
594-604
0.007
3
AC002059.10
hsa-miR-148b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608014
Biotype: sense_intronic
Gene id: ENSG00000273216
Gene Name: AC002059.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-134
0.029
1
RP11-469J4.3
hsa-miR-148b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468232
Biotype: lincRNA
Gene id: ENSG00000242578
Gene Name: RP11-469J4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-659
0.023
1
6mer
92-97
0.006
0
AC005614.3
hsa-miR-148b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598952
Biotype: antisense
Gene id: ENSG00000269296
Gene Name: AC005614.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-454
0.022
1
7mer
1445-1472
0.004
1
6mer
2083-2099
0.002
Not Conserved
RP11-744J10.3
hsa-miR-148b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519557
Biotype: lincRNA
Gene id: ENSG00000253479
Gene Name: RP11-744J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-148
0.029
0
FMR1-AS1
hsa-miR-148b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-288
0.017
1
7mer
253-276
0.008
2
6mer
1410-1425
0.003
2
XLOC_007087
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015010
Biotype: transcript isomorph
Gene id: XLOC_007087
Gene Name: XLOC_007087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3689-3709
0.015
5
6mer
4380-4394
0.004
1
6mer
4029-4053
0.003
3
6mer
4043-4056
0.003
1
6mer
2258-2283
0.002
1
6mer
1701-1716
0.001
0
6mer
3296-3313
0.001
0
RP11-548N17.1
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000611187
Biotype: antisense
Gene id: ENSG00000275762
Gene Name: RP11-548N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-29
0.028
0
LINC00307
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451410
Biotype: lincRNA
Gene id: ENSG00000227342
Gene Name: LINC00307
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-93
0.028
2
RP11-177N22.3
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573040
Biotype: sense_intronic
Gene id: ENSG00000262038
Gene Name: RP11-177N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-296
0.028
2
RP1-78B3.1
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5138-5165
0.007
0
8mer
1245-1257
0.005
1
7mer
4680-4693
0.004
3
6mer
7085-7090
0.003
1
6mer
7551-7578
0.003
0
6mer
2777-2799
0.002
1
6mer
940-957
0.002
0
6mer
4976-4997
0.001
1
XLOC_001313
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004663
Biotype: transcript isomorph
Gene id: XLOC_001313
Gene Name: XLOC_001313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-135
0.028
0
UBA6-AS1
hsa-miR-148b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511571
Biotype: antisense
Gene id: ENSG00000248049
Gene Name: UBA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-40
0.028
2
XLOC_012759
hsa-miR-148b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026415
Biotype: transcript isomorph
Gene id: XLOC_012759
Gene Name: XLOC_012759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
970-987
0.016
1
6mer
111-136
0.005
0
6mer
633-647
0.004
1
6mer
616-642
0.003
2
XLOC_008668
hsa-miR-148b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018386
Biotype: transcript isomorph
Gene id: XLOC_008668
Gene Name: XLOC_008668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
204-228
0.012
4
8mer
306-331
0.010
0
6mer
250-263
0.003
Not Conserved
6mer
374-386
0.003
0
RP11-389C8.2
hsa-miR-148b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-167
0.024
0
6mer
649-671
0.004
2
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