LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-276H1.3
hsa-miR-148b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000312019
Biotype: antisense
Gene id: ENSG00000175604
Gene Name: RP11-276H1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
245-262
0.020
0
7mer
1719-1732
0.005
1
6mer
1439-1461
0.004
1
AC073130.1
hsa-miR-148b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457033
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1058-1078
0.016
1
7mer
655-660
0.009
1
6mer
231-253
0.004
1
RP11-287D1.4
hsa-miR-148b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000401851
Biotype: lincRNA
Gene id: ENSG00000217702
Gene Name: RP11-287D1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-874
0.029
3
RP11-315F22.1
hsa-miR-148b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567853
Biotype: lincRNA
Gene id: ENSG00000259889
Gene Name: RP11-315F22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-203
0.029
1
HCP5
hsa-miR-148b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000541196
Biotype: sense_overlapping
Gene id: ENSG00000206337
Gene Name: HCP5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-947
0.015
Not Conserved
7mer
2132-2148
0.014
0
XLOC_009325
hsa-miR-148b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019115
Biotype: transcript isomorph
Gene id: XLOC_009325
Gene Name: XLOC_009325
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-251
0.018
1
6mer
448-470
0.007
5
6mer
235-257
0.003
1
MIR143HG
hsa-miR-148b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523269
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-385
0.026
4
6mer
302-323
0.003
1
AC007405.4
hsa-miR-148b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623667
Biotype: lincRNA
Gene id: ENSG00000234350
Gene Name: AC007405.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
799-814
0.013
4
6mer
250-275
0.011
5
6mer
282-304
0.006
2
MGC27345
hsa-miR-148b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-506
0.018
1
8mer
7499-7524
0.006
0
6mer
8358-8377
0.002
2
6mer
9056-9069
0.002
1
XLOC_002960
hsa-miR-148b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006344
Biotype: transcript isomorph
Gene id: XLOC_002960
Gene Name: XLOC_002960
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-358
0.024
3
6mer
784-806
0.005
1
XLOC_001592
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002716
Biotype: transcript isomorph
Gene id: XLOC_001592
Gene Name: XLOC_001592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-718
0.023
1
6mer
2007-2029
0.004
1
6mer
1085-1094
0.002
2
RP11-299H21.1
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610202
Biotype: lincRNA
Gene id: ENSG00000272902
Gene Name: RP11-299H21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-718
0.023
1
6mer
2007-2029
0.004
1
6mer
1085-1094
0.002
2
RP11-268G12.3
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000436019
Biotype: lincRNA
Gene id: ENSG00000242021
Gene Name: RP11-268G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-206
0.029
1
RP11-41O4.1
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583247
Biotype: lincRNA
Gene id: ENSG00000266258
Gene Name: RP11-41O4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-396
0.029
0
LINC01322
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498616
Biotype: lincRNA
Gene id: ENSG00000244128
Gene Name: LINC01322
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-124
0.018
9
6mer
453-473
0.006
1
6mer
528-552
0.005
0
RP11-556I14.2
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515127
Biotype: lincRNA
Gene id: ENSG00000248242
Gene Name: RP11-556I14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-166
0.029
1
RP11-723G8.1
hsa-miR-148b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563639
Biotype: lincRNA
Gene id: ENSG00000260457
Gene Name: RP11-723G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-454
0.029
0
RP11-932O9.8
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602595
Biotype: antisense
Gene id: ENSG00000270016
Gene Name: RP11-932O9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-142
0.029
0
RP11-178C3.2
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586209
Biotype: lincRNA
Gene id: ENSG00000267302
Gene Name: RP11-178C3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-303
0.018
5
6mer
1457-1482
0.007
1
6mer
931-953
0.004
3
RP11-510C10.4
hsa-miR-148b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565735
Biotype: lincRNA
Gene id: ENSG00000261213
Gene Name: RP11-510C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1379-1389
0.019
8
9mer
1104-1111
0.009
1
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