LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LINC00343
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454555
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-352
0.027
0
6mer
750-775
0.002
0
AC105402.4
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446781
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1068-1076
0.018
2
7mer
1882-1907
0.007
2
6mer
1871-1878
0.002
2
6mer
896-917
0.002
1
XLOC_008828
hsa-miR-148b-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018521
Biotype: transcript isomorph
Gene id: XLOC_008828
Gene Name: XLOC_008828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
72-87
0.015
1
7mer
42-52
0.015
0
CTB-174D11.1
hsa-miR-148b-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511447
Biotype: antisense
Gene id: ENSG00000248222
Gene Name: CTB-174D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-404
0.029
1
LINC00282
hsa-miR-148b-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027047.1
Biotype: lincRNA
Gene id: NR_027047.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3988-4005
0.025
3
6mer
582-605
0.004
1
AC114783.1
hsa-miR-148b-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454927
Biotype: lincRNA
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-160
0.016
1
6mer
53-74
0.007
3
7mer
76-96
0.006
1
CTB-147C22.9
hsa-miR-148b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594512
Biotype: antisense
Gene id: ENSG00000267879
Gene Name: CTB-147C22.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-118
0.014
0
7mer
353-379
0.011
2
6mer
346-368
0.005
1
UBE2E1-AS1
hsa-miR-148b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426702
Biotype: antisense
Gene id: ENSG00000223791
Gene Name: UBE2E1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-430
0.025
1
6mer
47-69
0.005
2
RP11-932O9.7
hsa-miR-148b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501830
Biotype: antisense
Gene id: ENSG00000247728
Gene Name: RP11-932O9.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
444-467
0.023
0
6mer
871-886
0.006
2
LINC00301
hsa-miR-148b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412599
Biotype: lincRNA
Gene id: ENSG00000181995
Gene Name: LINC00301
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-463
0.018
0
6mer
652-669
0.007
2
6mer
371-381
0.004
1
FMR1-AS1
hsa-miR-148b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000594922
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-288
0.018
1
7mer
253-276
0.007
2
6mer
1410-1425
0.004
2
RP11-158G18.1
hsa-miR-148b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607148
Biotype: sense_intronic
Gene id: ENSG00000272477
Gene Name: RP11-158G18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-179
0.029
2
ZNRD1-AS1
hsa-miR-148b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421692
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-447
0.018
1
7mer
706-720
0.006
4
6mer
1441-1457
0.006
1
RP11-433M22.1
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579033
Biotype: sense_intronic
Gene id: ENSG00000266222
Gene Name: RP11-433M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-192
0.029
2
C1orf132
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11415-11433
0.004
Not Conserved
7mer
818-845
0.004
2
8mer
8383-8407
0.003
1
7mer
2921-2943
0.003
1
6mer
1086-1111
0.003
2
6mer
11594-11605
0.002
1
8mer
8069-8082
0.002
0
6mer
5980-6006
0.002
4
6mer
6761-6783
0.002
2
6mer
7760-7785
0.002
1
6mer
8522-8536
0.001
2
6mer
8946-8965
0.001
1
7mer
7730-7755
0.001
2
6mer
8028-8038
0.001
2
RP11-57H12.5
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444665
Biotype: antisense
Gene id: ENSG00000228852
Gene Name: RP11-57H12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-228
0.029
4
RP4-568F9.6
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457009
Biotype: lincRNA
Gene id: ENSG00000230010
Gene Name: RP4-568F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1013-1028
0.015
0
7mer
330-354
0.007
0
6mer
522-546
0.007
1
RP3-332B22.1
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418834
Biotype: lincRNA
Gene id: ENSG00000236013
Gene Name: RP3-332B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-423
0.017
1
6mer
777-789
0.007
1
6mer
393-415
0.005
1
CTA-292E10.9
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1796-1817
0.005
11
7mer
11937-11961
0.005
0
8mer
16095-16118
0.004
0
6mer
7240-7257
0.002
1
6mer
15076-15093
0.002
1
6mer
12361-12365
0.002
2
6mer
17817-17841
0.002
1
6mer
4784-4798
0.002
3
6mer
12927-12943
0.002
2
6mer
16969-16988
0.002
0
6mer
1855-1876
0.001
5
XLOC_001342
hsa-miR-148b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003569
Biotype: transcript isomorph
Gene id: XLOC_001342
Gene Name: XLOC_001342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3799-3814
0.022
0
7mer
3947-3956
0.003
0
7mer
1309-1323
0.002
0
6mer
2879-2899
0.001
1
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