LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
AC114783.1
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437793
Biotype: retained_intron
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-122
0.016
1
7mer
38-58
0.007
1
6mer
15-36
0.007
3
RP5-1139I1.1
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000428222
Biotype: lincRNA
Gene id: ENSG00000230392
Gene Name: RP5-1139I1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-93
0.015
Not Conserved
7mer
2864-2874
0.014
0
XLOC_001751
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
808-826
0.009
1
6mer
2206-2229
0.008
0
6mer
1283-1309
0.007
1
6mer
808-833
0.005
1
UBA6-AS1
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499180
Biotype: antisense
Gene id: ENSG00000248049
Gene Name: UBA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-61
0.027
2
6mer
170-187
0.003
0
XLOC_011211
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023349
Biotype: transcript isomorph
Gene id: XLOC_011211
Gene Name: XLOC_011211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-45
0.030
0
AC007750.5
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418968
Biotype: antisense
Gene id: ENSG00000236841
Gene Name: AC007750.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3402-3414
0.014
4
7mer
2857-2883
0.008
1
6mer
1011-1020
0.004
1
6mer
1558-1571
0.002
2
6mer
1015-1034
0.001
1
6mer
1674-1697
0.001
1
CTD-2171N6.1
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589125
Biotype: lincRNA
Gene id: ENSG00000267013
Gene Name: CTD-2171N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-672
0.025
0
7mer
1054-1072
0.005
1
LINC01000
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-489
0.009
0
7mer
9765-9791
0.009
1
6mer
658-680
0.004
1
8mer
3892-3911
0.003
0
6mer
6691-6718
0.002
0
6mer
4262-4289
0.002
Not Conserved
6mer
2575-2594
0.001
0
AC097467.2
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616339
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
493-507
0.030
6
LINC00343
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000599179
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-286
0.026
0
6mer
684-709
0.004
0
RP11-575L7.4
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586211
Biotype: antisense
Gene id: ENSG00000231616
Gene Name: RP11-575L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-581
0.030
3
XLOC_012833
hsa-miR-148b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026507
Biotype: transcript isomorph
Gene id: XLOC_012833
Gene Name: XLOC_012833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
759-782
0.015
4
9mer
1341-1362
0.008
1
6mer
871-888
0.003
1
7mer
1520-1547
0.003
0
RP11-12M5.1
hsa-miR-148b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451471
Biotype: lincRNA
Gene id: ENSG00000243062
Gene Name: RP11-12M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-353
0.030
2
RP5-884M6.1
hsa-miR-148b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000602761
Biotype: lincRNA
Gene id: ENSG00000228742
Gene Name: RP5-884M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-188
0.009
2
7mer
2673-2692
0.008
1
6mer
2878-2901
0.006
1
6mer
2201-2224
0.003
1
6mer
197-215
0.003
0
RP5-896L10.1
hsa-miR-148b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425113
Biotype: antisense
Gene id: ENSG00000232825
Gene Name: RP5-896L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
30-53
0.009
7
7mer
570-596
0.005
1
9mer
990-1012
0.005
1
6mer
1995-2020
0.005
2
7mer
919-938
0.004
1
6mer
651-672
0.002
1
FAM183CP
hsa-miR-148b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521245
Biotype: lincRNA
Gene id: ENSG00000253279
Gene Name: FAM183CP
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2499-2518
0.020
3
6mer
2243-2266
0.007
4
6mer
941-949
0.002
0
RP11-475D12.2
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435367
Biotype: lincRNA
Gene id: ENSG00000224504
Gene Name: RP11-475D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2007
0.026
2
6mer
990-1014
0.004
1
RP3-325F22.3
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432477
Biotype: antisense
Gene id: ENSG00000234263
Gene Name: RP3-325F22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-431
0.029
1
LINC00706
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108074.1
Biotype: lincRNA
Gene id: NR_108074.1 (gene)
Gene Name: LINC00706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-234
0.022
1
6mer
60-86
0.007
1
RP11-981G7.1
hsa-miR-148b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4406-4421
0.022
0
7mer
3877-3900
0.006
1
6mer
1527-1548
0.001
Not Conserved
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