LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-332J15.4
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606566
Biotype: lincRNA
Gene id: ENSG00000272071
Gene Name: RP11-332J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-449
0.030
1
RP11-154D6.1
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000615921
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-91
0.018
1
6mer
492-509
0.007
2
6mer
557-573
0.005
1
XLOC_005834
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012278
Biotype: transcript isomorph
Gene id: XLOC_005834
Gene Name: XLOC_005834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-359
0.030
1
PRKG1-AS1
hsa-miR-148b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
619-644
0.007
11
6mer
1735-1753
0.006
8
7mer
871-887
0.005
5
6mer
1022-1038
0.005
9
6mer
2126-2135
0.004
1
6mer
1318-1339
0.002
1
RP4-751H13.7
hsa-miR-148b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608963
Biotype: antisense
Gene id: ENSG00000273419
Gene Name: RP4-751H13.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3277-3297
0.022
8
6mer
2893-2915
0.005
7
7mer
1941-1962
0.002
0
RP11-166D19.1
hsa-miR-148b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532319
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-592
0.011
3
7mer
385-402
0.007
1
6mer
123-142
0.007
1
7mer
362-372
0.005
1
RP11-78A19.3
hsa-miR-148b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586474
Biotype: antisense
Gene id: ENSG00000267165
Gene Name: RP11-78A19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
105-120
0.030
1
NPHP3-ACAD11
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5424-5441
0.007
3
6mer
4694-4717
0.004
7
7mer
4313-4333
0.003
3
6mer
3086-3101
0.003
8
6mer
2874-2899
0.003
4
8mer+mismatch
2263-2282
0.003
4
6mer
4110-4137
0.003
5
7mer
3323-3344
0.003
3
6mer
2481-2499
0.002
5
6mer
2120-2131
0.001
4
CTD-2311B13.2
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549951
Biotype: lincRNA
Gene id: ENSG00000258265
Gene Name: CTD-2311B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-293
0.030
1
XLOC_002766
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006158
Biotype: transcript isomorph
Gene id: XLOC_002766
Gene Name: XLOC_002766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-277
0.025
1
6mer
574-598
0.005
1
RP11-190J1.3
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458489
Biotype: lincRNA
Gene id: ENSG00000224817
Gene Name: RP11-190J1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-249
0.030
9
RP1-149A16.3
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000420171
Biotype: lincRNA
Gene id: ENSG00000230736
Gene Name: RP1-149A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1139-1154
0.022
1
7mer
563-573
0.008
1
RP11-112L7.1
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564402
Biotype: lincRNA
Gene id: ENSG00000260786
Gene Name: RP11-112L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-473
0.013
2
7mer
584-608
0.009
1
8mer
781-798
0.005
Not Conserved
6mer
1460-1484
0.002
2
XLOC_001668
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3515-3529
0.010
1
6mer
846-856
0.009
1
6mer
3227-3235
0.006
1
6mer
676-690
0.005
0
PAX8-AS1
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609210
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1204-1227
0.014
6
7mer
245-260
0.009
1
6mer
754-772
0.004
5
6mer
705-723
0.003
0
AC097467.2
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600928
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-753
0.030
6
UBAC2-AS1
hsa-miR-148b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445737
Biotype: lincRNA
Gene id: ENSG00000228889
Gene Name: UBAC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-479
0.020
0
7mer
1195-1216
0.006
0
6mer
789-809
0.004
0
LINC00668
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583840
Biotype: lincRNA
Gene id: ENSG00000265933
Gene Name: LINC00668
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-25
0.030
3
UBAC2-AS1
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000426037
Biotype: lincRNA
Gene id: ENSG00000228889
Gene Name: UBAC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-479
0.020
0
7mer
1195-1216
0.006
0
6mer
789-809
0.004
0
XLOC_006838
hsa-miR-148b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014754
Biotype: transcript isomorph
Gene id: XLOC_006838
Gene Name: XLOC_006838
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-507
0.030
4
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