LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-474D1.3
hsa-miR-148b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000291374
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
620-634
0.008
0
6mer
53-74
0.006
1
7mer
2137-2153
0.006
1
7mer
2426-2444
0.005
0
6mer
2784-2803
0.003
0
6mer
1454-1473
0.002
2
6mer
1278-1302
0.002
0
RP5-943J3.1
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432395
Biotype: sense_intronic
Gene id: ENSG00000231613
Gene Name: RP5-943J3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-466
0.030
2
FMR1-AS1
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000596112
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-288
0.017
1
7mer
253-276
0.009
2
6mer
1410-1425
0.005
2
AC009365.4
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436379
Biotype: antisense
Gene id: ENSG00000225881
Gene Name: AC009365.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-578
0.030
Not Conserved
RP11-528A4.2
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439074
Biotype: lincRNA
Gene id: ENSG00000229155
Gene Name: RP11-528A4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-504
0.019
0
6mer
6-33
0.007
3
6mer
271-289
0.003
1
RP11-443B7.1
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458044
Biotype: lincRNA
Gene id: ENSG00000238005
Gene Name: RP11-443B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-305
0.025
Not Conserved
6mer
166-179
0.005
1
RP11-806L2.2
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-560
0.015
1
6mer
2016-2031
0.006
2
7mer
1238-1256
0.004
0
6mer
1230-1237
0.003
1
6mer
1228-1245
0.002
0
RPA3-AS1
hsa-miR-148b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034084.1
Biotype: sense
Gene id: NR_034084.1 (gene)
Gene Name: RPA3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1588-1595
0.016
3
7mer
1277-1299
0.006
2
6mer
755-771
0.005
1
6mer
874-896
0.003
4
XLOC_000647
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002272
Biotype: transcript isomorph
Gene id: XLOC_000647
Gene Name: XLOC_000647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-389
0.030
1
RP11-64C12.6
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592370
Biotype: lincRNA
Gene id: ENSG00000267247
Gene Name: RP11-64C12.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-210
0.030
0
LINC00282
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027048.1
Biotype: lincRNA
Gene id: NR_027048.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3845-3862
0.026
3
6mer
582-605
0.004
1
LINC00466
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455304
Biotype: lincRNA
Gene id: ENSG00000224209
Gene Name: LINC00466
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-45
0.025
2
6mer
136-152
0.005
1
C22orf34
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414287
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1615-1630
0.011
0
7mer
2099-2117
0.006
1
6mer
665-687
0.004
2
8mer
1556-1574
0.004
Not Conserved
7mer
1274-1300
0.003
Not Conserved
6mer
612-635
0.003
0
AC007246.3
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438649
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1539-1562
0.014
7
6mer
1786-1812
0.006
1
6mer
1827-1848
0.006
1
7mer
625-650
0.004
2
XLOC_009079
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019861
Biotype: transcript isomorph
Gene id: XLOC_009079
Gene Name: XLOC_009079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-665
0.023
3
6mer
148-167
0.008
1
RP4-565E6.1
hsa-miR-148b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2421-2434
0.009
1
6mer
2348-2363
0.008
3
6mer
90-116
0.008
2
6mer
2121-2134
0.005
1
NOVA1-AS1
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000547786
Biotype: antisense
Gene id: ENSG00000257842
Gene Name: NOVA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-423
0.016
5
6mer
533-553
0.009
6
7mer
166-192
0.005
1
CTB-57H20.1
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503323
Biotype: sense_overlapping
Gene id: ENSG00000249881
Gene Name: CTB-57H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-44
0.030
4
RP11-287D1.4
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616370
Biotype: lincRNA
Gene id: ENSG00000217702
Gene Name: RP11-287D1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-445
0.030
3
AC002064.5
hsa-miR-148b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445784
Biotype: lincRNA
Gene id: ENSG00000225498
Gene Name: AC002064.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-394
0.030
1
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