LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
LINC01024
hsa-miR-148b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521563
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-338
0.017
1
6mer
449-464
0.005
4
6mer
231-256
0.005
2
6mer
301-312
0.003
1
C5orf64
hsa-miR-148b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-649
0.021
3
7mer
2417-2437
0.008
1
6mer
1467-1478
0.002
0
XLOC_003703
hsa-miR-148b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008260
Biotype: transcript isomorph
Gene id: XLOC_003703
Gene Name: XLOC_003703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-209
0.013
6
7mer
475-491
0.009
1
7mer
132-137
0.009
1
XLOC_007438
hsa-miR-148b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-37
0.019
1
7mer
1689-1701
0.003
1
7mer
5059-5070
0.003
1
6mer
2071-2082
0.002
1
7mer
3131-3145
0.002
0
6mer
3249-3265
0.001
1
6mer
2072-2091
0.001
0
XLOC_001489
hsa-miR-148b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002901
Biotype: transcript isomorph
Gene id: XLOC_001489
Gene Name: XLOC_001489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2804-2819
0.031
1
RP11-474B16.1
hsa-miR-148b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549251
Biotype: antisense
Gene id: ENSG00000257642
Gene Name: RP11-474B16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-513
0.031
0
XLOC_000199
hsa-miR-148b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1563-1580
0.023
1
7mer
508-534
0.008
0
LINC00309
hsa-miR-148b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-441
0.016
5
6mer
3189-3203
0.010
3
6mer
2457-2479
0.005
2
XLOC_002123
hsa-miR-148b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002666
Biotype: transcript isomorph
Gene id: XLOC_002123
Gene Name: XLOC_002123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-438
0.016
5
6mer
3186-3200
0.010
3
6mer
2454-2476
0.005
2
AC004540.4
hsa-miR-148b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451264
Biotype: antisense
Gene id: ENSG00000225792
Gene Name: AC004540.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-96
0.031
10
XLOC_004467
hsa-miR-148b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010037
Biotype: transcript isomorph
Gene id: XLOC_004467
Gene Name: XLOC_004467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2284-2298
0.009
0
6mer
3217-3226
0.005
0
6mer
3073-3089
0.005
1
6mer
2714-2736
0.004
0
6mer
1258-1282
0.003
2
6mer
1499-1517
0.002
1
6mer
1993-2006
0.002
Not Conserved
7mer
1594-1618
0.002
Not Conserved
6mer
1662-1681
0.001
0
RP11-80F22.15
hsa-miR-148b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_034018.1
Biotype: lincRNA
Gene id: NR_034018.1 (gene)
Gene Name: RP11-80F22.15
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-63
0.031
0
XLOC_010257
hsa-miR-148b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020992
Biotype: transcript isomorph
Gene id: XLOC_010257
Gene Name: XLOC_010257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
981-1000
0.011
1
7mer
1281-1293
0.008
1
6mer
1318-1340
0.008
1
6mer
1084-1093
0.004
1
HP08942
hsa-miR-148b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000456235
Biotype: lincRNA
Gene id: ENSG00000236819
Gene Name: HP08942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-507
0.031
0
LINC00968
hsa-miR-148b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499425
Biotype: lincRNA
Gene id: ENSG00000246430
Gene Name: LINC00968
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1438-1458
0.018
5
6mer
7-32
0.006
1
6mer
2029-2043
0.004
1
6mer
1045-1062
0.002
0
RORB-AS1
hsa-miR-148b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417576
Biotype: antisense
Gene id: ENSG00000224825
Gene Name: RORB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
737-758
0.027
5
7mer
629-638
0.004
Not Conserved
RP4-781K5.2
hsa-miR-148b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436039
Biotype: antisense
Gene id: ENSG00000228830
Gene Name: RP4-781K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-311
0.031
10
AC136896.1
hsa-miR-148b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000439938
Biotype: antisense
Gene id: ENSG00000228740
Gene Name: AC136896.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-228
0.018
1
6mer
754-779
0.007
1
6mer
88-101
0.005
1
LINC00494
hsa-miR-148b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433094
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
126-147
0.014
0
7mer
2687-2708
0.012
1
7mer
2286-2299
0.005
0
PARD6G-AS1
hsa-miR-148b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-253
0.030
1
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