LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
AC114783.1
hsa-miR-148b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458326
Biotype: lincRNA
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
129-148
0.018
1
7mer
64-84
0.007
1
6mer
41-62
0.006
3
C5orf64
hsa-miR-148b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-574
0.021
3
7mer
2342-2362
0.008
1
6mer
1392-1403
0.002
0
SEPT7-AS1
hsa-miR-148b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437235
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3569-3585
0.012
2
9mer
2938-2953
0.009
1
7mer
3392-3415
0.009
1
6mer
2090-2108
0.002
4
LINC01024
hsa-miR-148b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-345
0.017
1
6mer
456-471
0.006
4
6mer
238-263
0.006
2
6mer
308-319
0.003
1
LINC00648
hsa-miR-148b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553747
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-219
0.025
3
6mer
253-274
0.007
2
RP11-70F11.8
hsa-miR-148b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546821
Biotype: lincRNA
Gene id: ENSG00000257771
Gene Name: RP11-70F11.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3075-3097
0.015
0
7mer
145-164
0.008
1
7mer
446-467
0.004
1
6mer
479-494
0.003
1
6mer
1049-1063
0.002
1
CTA-212A2.3
hsa-miR-148b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10756-10770
0.013
2
7mer
10429-10445
0.010
1
6mer
4474-4489
0.003
3
6mer
7121-7145
0.003
0
6mer
3700-3725
0.002
0
6mer
7803-7824
0.001
0
RP11-945F5.1
hsa-miR-148b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554319
Biotype: lincRNA
Gene id: ENSG00000258845
Gene Name: RP11-945F5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-286
0.027
0
6mer
97-111
0.004
1
AC125421.1
hsa-miR-148b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2382-2396
0.016
0
6mer
2052-2078
0.007
3
8mer
1788-1803
0.005
0
6mer
223-240
0.003
Not Conserved
AC114783.1
hsa-miR-148b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568484
Biotype: lincRNA
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-141
0.018
1
7mer
57-77
0.007
1
6mer
34-55
0.006
3
AC114783.1
hsa-miR-148b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450035
Biotype: lincRNA
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-141
0.018
1
7mer
57-77
0.007
1
6mer
34-55
0.006
3
MIR7515HG
hsa-miR-148b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585834
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-633
0.015
1
6mer
64-73
0.012
6
7mer
316-338
0.004
3
C10orf40
hsa-miR-148b-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444900
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-167
0.031
1
AC009120.11
hsa-miR-148b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000616116
Biotype: lincRNA
Gene id: ENSG00000275236
Gene Name: AC009120.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-109
0.025
Not Conserved
7mer
607-633
0.006
1
USP27X-AS1
hsa-miR-148b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437322
Biotype: lincRNA
Gene id: ENSG00000234390
Gene Name: USP27X-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-499
0.031
2
XLOC_002323
hsa-miR-148b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004445
Biotype: transcript isomorph
Gene id: XLOC_002323
Gene Name: XLOC_002323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1014-1031
0.024
0
6mer
591-612
0.007
1
TMEM161B-AS1
hsa-miR-148b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512724
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-194
0.014
1
7mer
368-381
0.010
1
6mer
442-451
0.007
1
RP11-413H22.2
hsa-miR-148b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563090
Biotype: antisense
Gene id: ENSG00000260621
Gene Name: RP11-413H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
214-232
0.016
13
7mer
469-488
0.015
2
RP11-80F22.15
hsa-miR-148b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562591
Biotype: lincRNA
Gene id: ENSG00000260857
Gene Name: RP11-80F22.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-57
0.031
0
TUG1
hsa-miR-148b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1719-1734
0.018
6
6mer
183-204
0.009
4
6mer
2195-2207
0.004
1
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