LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
MANEA-AS1
hsa-miR-148b-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564541
Biotype: antisense
Gene id: ENSG00000261366
Gene Name: MANEA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1928-1951
0.013
0
7mer
1685-1703
0.008
5
6mer
2114-2127
0.006
1
7mer
1800-1822
0.005
0
LINC00963
hsa-miR-148b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000624009
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-599
0.032
1
XLOC_012664
hsa-miR-148b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026615
Biotype: transcript isomorph
Gene id: XLOC_012664
Gene Name: XLOC_012664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2554-2580
0.018
0
8mer
2721-2745
0.014
3
RP11-504I13.3
hsa-miR-148b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
208-226
0.032
1
RP4-717I23.3
hsa-miR-148b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602488
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-296
0.032
2
LINC00662
hsa-miR-148b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027301.1
Biotype: lincRNA
Gene id: NR_027301.1 (gene)
Gene Name: LINC00662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-368
0.019
0
6mer
796-820
0.013
0
LINC00662
hsa-miR-148b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590523
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-370
0.019
0
6mer
798-822
0.013
0
C10orf40
hsa-miR-148b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430888
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-99
0.032
1
LINC00923
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558179
Biotype: lincRNA
Gene id: ENSG00000251209
Gene Name: LINC00923
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-213
0.032
8
KB-1460A1.5
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565617
Biotype: lincRNA
Gene id: ENSG00000261087
Gene Name: KB-1460A1.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2188-2202
0.028
1
6mer
958-978
0.003
0
6mer
1383-1397
0.001
Not Conserved
RP11-495P10.7
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445201
Biotype: lincRNA
Gene id: ENSG00000244252
Gene Name: RP11-495P10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-472
0.032
1
AC008088.4
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563569
Biotype: lincRNA
Gene id: ENSG00000260907
Gene Name: AC008088.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-449
0.017
1
8mer
512-533
0.015
Not Conserved
RP13-192B19.2
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569460
Biotype: lincRNA
Gene id: ENSG00000260585
Gene Name: RP13-192B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3955-3976
0.023
1
6mer
4920-4946
0.005
0
6mer
722-742
0.004
1
LINC00343
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601607
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-150
0.028
0
6mer
548-573
0.004
0
AC006296.1
hsa-miR-148b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507932
Biotype: lincRNA
Gene id: ENSG00000251412
Gene Name: AC006296.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
606-623
0.018
1
8mer
297-308
0.010
1
6mer
314-335
0.004
0
CTC-321K16.4
hsa-miR-148b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508452
Biotype: lincRNA
Gene id: ENSG00000251045
Gene Name: CTC-321K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
674-692
0.026
3
6mer
391-403
0.006
2
RP11-1152H15.1
hsa-miR-148b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554519
Biotype: lincRNA
Gene id: ENSG00000258807
Gene Name: RP11-1152H15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-34
0.032
1
FMR1-AS1
hsa-miR-148b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598667
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-288
0.019
1
7mer
253-276
0.008
2
6mer
1410-1425
0.005
2
TSIX
hsa-miR-148b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22175-22190
0.005
0
7mer
6204-6228
0.004
1
8mer
28074-28091
0.004
1
7mer
28383-28392
0.004
1
8mer
3626-3648
0.003
0
6mer
20507-20524
0.002
2
6mer
26072-26097
0.002
Not Conserved
6mer
29828-29851
0.002
0
6mer
36083-36104
0.002
Not Conserved
6mer
34362-34383
0.002
2
6mer
10880-10906
0.001
0
6mer
13676-13694
0.001
Not Conserved
IQCH-AS1
hsa-miR-148b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559285
Biotype: lincRNA
Gene id: ENSG00000259673
Gene Name: IQCH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-276
0.013
8
7mer
857-875
0.010
3
7mer
719-737
0.005
Not Conserved
6mer
319-343
0.004
0
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