LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012427
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
476-494
0.013
0
6mer
635-656
0.013
0
6mer
2197-2216
0.002
Not Conserved
6mer
1874-1898
0.002
Not Conserved
8mer
1693-1710
0.002
Not Conserved
RP11-96H19.1
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611243
Biotype: lincRNA
Gene id: ENSG00000257261
Gene Name: RP11-96H19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1448-1461
0.023
2
7mer
981-1005
0.006
2
6mer
50-77
0.004
0
XLOC_013811
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028451
Biotype: transcript isomorph
Gene id: XLOC_013811
Gene Name: XLOC_013811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1284-1300
0.028
2
7mer
456-475
0.005
0
RP11-304C12.3
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531479
Biotype: lincRNA
Gene id: ENSG00000254443
Gene Name: RP11-304C12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2145-2165
0.033
0
UG0898H09
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6320-6338
0.018
1
7mer
5868-5887
0.006
3
8mer
3860-3881
0.005
2
6mer
3681-3695
0.001
1
6mer
3818-3844
0.001
4
7mer
3699-3722
0.001
1
AC087430.1
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-91
0.026
1
6mer
3160-3187
0.005
1
6mer
2373-2386
0.002
1
XLOC_013093
hsa-miR-148b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-286
0.018
1
6mer
3014-3027
0.015
1
RP11-774D14.1
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502427
Biotype: lincRNA
Gene id: ENSG00000251629
Gene Name: RP11-774D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1506-1526
0.017
2
6mer
1262-1282
0.009
2
6mer
1016-1035
0.004
1
6mer
1299-1306
0.004
3
XLOC_006268
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013605
Biotype: transcript isomorph
Gene id: XLOC_006268
Gene Name: XLOC_006268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-157
0.018
1
7mer
191-201
0.015
0
CTB-174D11.1
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509170
Biotype: antisense
Gene id: ENSG00000248222
Gene Name: CTB-174D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-487
0.029
1
6mer
142-164
0.004
3
LINC01035
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445072
Biotype: lincRNA
Gene id: ENSG00000226486
Gene Name: LINC01035
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
720-730
0.033
1
RNF157-AS1
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592748
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-171
0.033
3
PRKCQ-AS1
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609346
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
677-695
0.024
2
6mer
10-33
0.004
1
6mer
430-449
0.004
0
AC007750.5
hsa-miR-148b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110255.1
Biotype: antisense
Gene id: NR_110255.1 (gene)
Gene Name: AC007750.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3397-3409
0.016
4
7mer
2852-2878
0.009
1
6mer
1006-1015
0.004
1
6mer
1553-1566
0.002
2
6mer
1010-1029
0.001
1
6mer
1669-1692
0.001
1
XLOC_010319
hsa-miR-148b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021734
Biotype: transcript isomorph
Gene id: XLOC_010319
Gene Name: XLOC_010319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.033
2
RP11-785H5.1
hsa-miR-148b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622602
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-559
0.016
2
6mer
4374-4386
0.009
3
6mer
4740-4763
0.008
1
RP11-359E3.4
hsa-miR-148b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608826
Biotype: antisense
Gene id: ENSG00000272631
Gene Name: RP11-359E3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1115-1137
0.029
0
6mer
2134-2146
0.002
0
6mer
3066-3086
0.002
2
RP11-456K23.1
hsa-miR-148b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592638
Biotype: lincRNA
Gene id: ENSG00000267414
Gene Name: RP11-456K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
928-951
0.013
4
9mer
1510-1531
0.012
1
7mer
1689-1716
0.004
0
6mer
1040-1057
0.003
1
RP11-90B9.3
hsa-miR-148b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616598
Biotype: antisense
Gene id: ENSG00000273747
Gene Name: RP11-90B9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-419
0.033
2
ERVK3-1
hsa-miR-148b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000608004
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-202
0.033
0
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