LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001979
hsa-miR-148b-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004136
Biotype: transcript isomorph
Gene id: XLOC_001979
Gene Name: XLOC_001979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-248
0.034
1
LINC01088
hsa-miR-148b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511241
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
650-663
0.023
10
7mer
67-84
0.010
1
XLOC_001963
hsa-miR-148b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-65
0.025
1
9mer
970-993
0.009
1
XLOC_001079
hsa-miR-148b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000666
Biotype: transcript isomorph
Gene id: XLOC_001079
Gene Name: XLOC_001079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-532
0.033
1
CTB-89H12.4
hsa-miR-148b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2407-2422
0.009
10
6mer
8384-8408
0.007
6
6mer
8560-8577
0.006
6
8mer
1389-1405
0.003
1
6mer
798-824
0.003
1
6mer
3520-3545
0.003
1
6mer
7611-7629
0.002
0
RP11-1217F2.15
hsa-miR-148b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442649
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-339
0.033
1
LINC00343
hsa-miR-148b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608426
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-276
0.028
0
6mer
674-699
0.005
0
RP11-752D24.2
hsa-miR-148b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510351
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-373
0.033
1
TRPM2-AS
hsa-miR-148b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2010-2029
0.033
1
AC073071.1
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412410
Biotype: lincRNA
Gene id: ENSG00000234273
Gene Name: AC073071.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-63
0.033
4
XLOC_007281
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015918
Biotype: transcript isomorph
Gene id: XLOC_007281
Gene Name: XLOC_007281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-101
0.033
4
LINC00343
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000598478
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-177
0.028
0
6mer
575-600
0.005
0
XLOC_014336
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029887
Biotype: transcript isomorph
Gene id: XLOC_014336
Gene Name: XLOC_014336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-78
0.033
1
RP11-983P16.4
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546566
Biotype: antisense
Gene id: ENSG00000257337
Gene Name: RP11-983P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1184-1197
0.019
7
7mer
439-455
0.011
2
6mer
1431-1451
0.003
1
RP11-693J15.5
hsa-miR-148b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10314-10331
0.007
0
8mer
8579-8589
0.006
0
8mer
1917-1931
0.006
1
8mer
8108-8121
0.005
0
6mer
9707-9722
0.005
2
6mer
4156-4179
0.003
3
7mer
8189-8199
0.001
0
RP11-510D19.1
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1970-1984
0.026
0
6mer
1311-1328
0.004
1
6mer
664-678
0.004
1
CTD-2047H16.4
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613190
Biotype: antisense
Gene id: ENSG00000263069
Gene Name: CTD-2047H16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1834-1854
0.017
1
8mer
1783-1804
0.016
0
RP11-10O22.1
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490357
Biotype: lincRNA
Gene id: ENSG00000241168
Gene Name: RP11-10O22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1776-1797
0.029
0
6mer
909-935
0.004
0
RP11-54H7.4
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3372-3388
0.013
0
8mer
2892-2905
0.006
1
6mer
3764-3790
0.006
2
6mer
313-332
0.004
0
6mer
1128-1147
0.002
Not Conserved
6mer
1533-1547
0.002
0
MUC19
hsa-miR-148b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424466
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
795-810
0.022
1
6mer
979-1005
0.006
1
6mer
786-802
0.004
0
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