LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
CTD-2076M15.1
hsa-miR-148b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
306-317
0.018
1
6mer
1184-1202
0.010
1
6mer
1460-1474
0.006
0
RP11-379B18.5
hsa-miR-148b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468859
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1931-1951
0.020
1
6mer
1411-1434
0.007
5
6mer
1426-1449
0.006
1
6mer
1420-1434
0.002
0
XLOC_005777
hsa-miR-148b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011225
Biotype: transcript isomorph
Gene id: XLOC_005777
Gene Name: XLOC_005777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1549-1570
0.028
3
6mer
1898-1917
0.003
0
7mer
1388-1406
0.003
0
LINC01205
hsa-miR-148b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489670
Biotype: lincRNA
Gene id: ENSG00000228980
Gene Name: LINC01205
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1280-1301
0.023
0
6mer
907-920
0.007
1
6mer
66-85
0.004
0
RP11-61J19.3
hsa-miR-148b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423842
Biotype: lincRNA
Gene id: ENSG00000228067
Gene Name: RP11-61J19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-219
0.030
1
6mer
124-144
0.004
0
XLOC_008765
hsa-miR-148b-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017944
Biotype: transcript isomorph
Gene id: XLOC_008765
Gene Name: XLOC_008765
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-145
0.034
0
RP11-30P6.6
hsa-miR-148b-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455071
Biotype: lincRNA
Gene id: ENSG00000234155
Gene Name: RP11-30P6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1551-1572
0.028
3
6mer
1900-1919
0.003
0
7mer
1390-1408
0.003
0
LINC01192
hsa-miR-148b-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493473
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-193
0.034
1
RP3-326I13.1
hsa-miR-148b-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440955
Biotype: lincRNA
Gene id: ENSG00000224294
Gene Name: RP3-326I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2189-2199
0.025
1
6mer
520-534
0.004
1
6mer
895-919
0.002
1
6mer
1100-1126
0.002
1
RP11-739B23.1
hsa-miR-148b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598970
Biotype: antisense
Gene id: ENSG00000268635
Gene Name: RP11-739B23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3293-3307
0.033
2
6mer
2092-2109
0.001
0
RP11-785H5.1
hsa-miR-148b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544420
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-600
0.016
2
6mer
4415-4427
0.009
3
6mer
4781-4804
0.009
1
XLOC_006385
hsa-miR-148b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013741
Biotype: transcript isomorph
Gene id: XLOC_006385
Gene Name: XLOC_006385
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-310
0.034
1
RP11-337C18.8
hsa-miR-148b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440377
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1393-1407
0.034
3
RP11-77P6.2
hsa-miR-148b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428940
Biotype: antisense
Gene id: ENSG00000227896
Gene Name: RP11-77P6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2899-2916
0.015
0
8mer
2406-2425
0.012
0
6mer
2872-2887
0.004
0
6mer
1304-1320
0.002
0
RP11-304C12.3
hsa-miR-148b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532430
Biotype: lincRNA
Gene id: ENSG00000254443
Gene Name: RP11-304C12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
982-1002
0.034
0
TUG1
hsa-miR-148b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569384
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-74
0.034
6
RP11-104L21.3
hsa-miR-148b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610044
Biotype: lincRNA
Gene id: ENSG00000273160
Gene Name: RP11-104L21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-189
0.028
0
6mer
237-257
0.006
2
AC018462.2
hsa-miR-148b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425966
Biotype: antisense
Gene id: ENSG00000229839
Gene Name: AC018462.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1220-1239
0.030
1
6mer
1547-1574
0.004
0
AE000658.22
hsa-miR-148b-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000535893
Biotype: antisense
Gene id: ENSG00000257096
Gene Name: AE000658.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-157
0.018
6
7mer
390-414
0.016
2
AC091729.9
hsa-miR-148b-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110070.1
Biotype: lincRNA
Gene id: NR_110070.1 (gene)
Gene Name: AC091729.9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
733-749
0.028
0
6mer
37-47
0.004
0
6mer
778-791
0.002
0
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