LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
GS1-304P7.3
hsa-miR-148b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609032
Biotype: lincRNA
Gene id: ENSG00000273198
Gene Name: GS1-304P7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-335
0.018
1
6mer
235-245
0.017
1
CTD-2124B20.3
hsa-miR-148b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582386
Biotype: sense_intronic
Gene id: ENSG00000265174
Gene Name: CTD-2124B20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-510
0.024
0
7mer
366-379
0.011
0
RP11-286E11.2
hsa-miR-148b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512428
Biotype: antisense
Gene id: ENSG00000249604
Gene Name: RP11-286E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1475-1498
0.018
3
7mer
825-834
0.010
3
6mer
2903-2919
0.008
1
XLOC_010734
hsa-miR-148b-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022125
Biotype: transcript isomorph
Gene id: XLOC_010734
Gene Name: XLOC_010734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-323
0.012
1
7mer
245-255
0.009
1
9mer
1430-1453
0.007
1
6mer
2063-2086
0.007
1
TUG1
hsa-miR-148b-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1330-1345
0.012
6
9mer
3856-3882
0.011
1
8mer
4323-4338
0.009
1
6mer
1792-1804
0.002
1
6mer
2426-2446
0.001
0
LINC01517
hsa-miR-148b-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-393
0.035
0
RP11-296O14.3
hsa-miR-148b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437190
Biotype: antisense
Gene id: ENSG00000203739
Gene Name: RP11-296O14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-596
0.020
2
6mer
421-431
0.010
6
6mer
909-932
0.005
1
XLOC_004799
hsa-miR-148b-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010313
Biotype: transcript isomorph
Gene id: XLOC_004799
Gene Name: XLOC_004799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1828-1850
0.028
1
6mer
1590-1611
0.004
0
6mer
612-628
0.003
2
RP11-44F21.3
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508031
Biotype: antisense
Gene id: ENSG00000249717
Gene Name: RP11-44F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
61-69
0.012
5
6mer
485-507
0.008
4
6mer
2218-2236
0.008
4
7mer
1025-1048
0.005
3
6mer
973-999
0.001
1
ZBED3-AS1
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508401
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-553
0.035
1
XLOC_014106
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029162
Biotype: transcript isomorph
Gene id: XLOC_014106
Gene Name: XLOC_014106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-318
0.033
1
6mer
210-227
0.002
Not Conserved
RP11-156L14.1
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577270
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3000-3025
0.010
1
6mer
333-350
0.006
1
6mer
757-779
0.006
8
6mer
713-733
0.006
5
6mer
1742-1761
0.004
4
6mer
2326-2348
0.003
2
LINC00900
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499809
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-33
0.017
Not Conserved
7mer
58-75
0.014
3
7mer
1281-1304
0.004
2
XLOC_011672
hsa-miR-148b-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024350
Biotype: transcript isomorph
Gene id: XLOC_011672
Gene Name: XLOC_011672
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-437
0.016
0
8mer
91-116
0.015
0
6mer
602-614
0.005
3
CTD-2636A23.2
hsa-miR-148b-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569313
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-235
0.035
2
RP11-408H1.3
hsa-miR-148b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424941
Biotype: lincRNA
Gene id: ENSG00000223387
Gene Name: RP11-408H1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-366
0.035
2
AC068483.1
hsa-miR-148b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413403
Biotype: lincRNA
Gene id: ENSG00000238277
Gene Name: AC068483.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-521
0.035
2
TMEM161B-AS1
hsa-miR-148b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501715
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-407
0.018
1
7mer
210-220
0.012
1
6mer
561-570
0.005
1
AC079466.1
hsa-miR-148b-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3989-4007
0.014
1
6mer
2541-2565
0.008
1
6mer
1959-1974
0.007
1
7mer
2797-2807
0.004
0
6mer
2091-2118
0.002
0
LINC00346
hsa-miR-148b-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000538077
Biotype: lincRNA
Gene id: ENSG00000255874
Gene Name: LINC00346
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2283-2309
0.014
1
8mer
3994-4010
0.014
2
6mer
5279-5294
0.003
1
6mer
1960-1982
0.002
1
6mer
1428-1443
0.001
Not Conserved
6mer
1874-1891
0.001
1
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