LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP5-1180C18.1
hsa-miR-148b-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413901
Biotype: lincRNA
Gene id: ENSG00000223944
Gene Name: RP5-1180C18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-27
0.037
1
XLOC_009116
hsa-miR-148b-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019284
Biotype: transcript isomorph
Gene id: XLOC_009116
Gene Name: XLOC_009116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-297
0.036
3
XLOC_001596
hsa-miR-148b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003801
Biotype: transcript isomorph
Gene id: XLOC_001596
Gene Name: XLOC_001596
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-595
0.025
1
6mer
194-203
0.007
3
6mer
104-120
0.004
1
RP11-562A8.4
hsa-miR-148b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560380
Biotype: antisense
Gene id: ENSG00000259298
Gene Name: RP11-562A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-109
0.036
0
RP11-1008C21.1
hsa-miR-148b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558897
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-252
0.036
3
LINC01234
hsa-miR-148b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547963
Biotype: lincRNA
Gene id: ENSG00000249550
Gene Name: LINC01234
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-350
0.014
1
7mer
129-139
0.013
1
6mer
300-321
0.006
1
6mer
856-870
0.003
0
XLOC_006028
hsa-miR-148b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012984
Biotype: transcript isomorph
Gene id: XLOC_006028
Gene Name: XLOC_006028
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-46
0.031
1
6mer
657-675
0.005
1
RP11-278C7.3
hsa-miR-148b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620472
Biotype: sense_intronic
Gene id: ENSG00000274105
Gene Name: RP11-278C7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-98
0.031
0
6mer
710-736
0.005
1
RP13-653N12.1
hsa-miR-148b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540745
Biotype: lincRNA
Gene id: ENSG00000256551
Gene Name: RP13-653N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
497-516
0.017
1
7mer
690-702
0.010
1
6mer
727-749
0.008
1
XLOC_000214
hsa-miR-148b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000209
Biotype: transcript isomorph
Gene id: XLOC_000214
Gene Name: XLOC_000214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17-35
0.036
0
RP11-532F6.5
hsa-miR-148b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607084
Biotype: lincRNA
Gene id: ENSG00000271911
Gene Name: RP11-532F6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1823-1834
0.006
1
6mer
1963-1973
0.006
1
7mer
1109-1125
0.005
2
6mer
1998-2008
0.005
1
6mer
1929-1939
0.005
1
6mer
1894-1904
0.005
0
6mer
1859-1869
0.004
0
XX-CR54.1
hsa-miR-148b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437830
Biotype: lincRNA
Gene id: ENSG00000229703
Gene Name: XX-CR54.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-142
0.036
1
XLOC_013685
hsa-miR-148b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028336
Biotype: transcript isomorph
Gene id: XLOC_013685
Gene Name: XLOC_013685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
817-833
0.013
2
7mer
77-90
0.008
2
7mer
50-76
0.007
Not Conserved
6mer
133-152
0.006
4
6mer
759-776
0.003
1
RP11-373D23.2
hsa-miR-148b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604052
Biotype: sense_intronic
Gene id: ENSG00000270640
Gene Name: RP11-373D23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-88
0.019
6
6mer
32-43
0.016
8
RP11-734K21.4
hsa-miR-148b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000474561
Biotype: lincRNA
Gene id: ENSG00000240980
Gene Name: RP11-734K21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-307
0.036
Not Conserved
XLOC_006820
hsa-miR-148b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014735
Biotype: transcript isomorph
Gene id: XLOC_006820
Gene Name: XLOC_006820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-207
0.032
4
6mer
401-421
0.004
Not Conserved
CTD-2134P3.1
hsa-miR-148b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504398
Biotype: lincRNA
Gene id: ENSG00000250453
Gene Name: CTD-2134P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-82
0.026
1
6mer
131-156
0.005
0
6mer
340-358
0.005
1
RP11-705C15.3
hsa-miR-148b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537616
Biotype: sense_intronic
Gene id: ENSG00000257027
Gene Name: RP11-705C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2139-2161
0.031
1
6mer
1026-1045
0.004
1
XLOC_001464
hsa-miR-148b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003671
Biotype: transcript isomorph
Gene id: XLOC_001464
Gene Name: XLOC_001464
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-619
0.016
1
7mer
836-858
0.014
2
6mer
1005-1013
0.005
3
RP11-269C4.2
hsa-miR-148b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553082
Biotype: antisense
Gene id: ENSG00000257904
Gene Name: RP11-269C4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-104
0.036
0
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