LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
SNX29P2
hsa-miR-148b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604430
Biotype: lincRNA
Gene id: ENSG00000198106
Gene Name: SNX29P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4637-4648
0.020
0
7mer
4121-4146
0.008
0
6mer
4615-4633
0.005
0
7mer
1931-1949
0.005
4
CTD-2037L6.2
hsa-miR-148b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505861
Biotype: lincRNA
Gene id: ENSG00000248132
Gene Name: CTD-2037L6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-484
0.038
0
RP11-325D8.1
hsa-miR-148b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554205
Biotype: lincRNA
Gene id: ENSG00000259028
Gene Name: RP11-325D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-426
0.038
0
RP11-122L4.1
hsa-miR-148b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518465
Biotype: lincRNA
Gene id: ENSG00000254067
Gene Name: RP11-122L4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-539
0.038
0
AC159540.1
hsa-miR-148b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000612970
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
900-920
0.029
0
6mer
520-532
0.005
0
6mer
485-494
0.004
0
RP5-936J12.1
hsa-miR-148b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414418
Biotype: lincRNA
Gene id: ENSG00000230864
Gene Name: RP5-936J12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-73
0.023
0
6mer
228-247
0.012
7
6mer
479-502
0.003
1
RP11-44F14.8
hsa-miR-148b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
287-299
0.022
1
6mer
311-327
0.015
1
RP11-513I15.6
hsa-miR-148b-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6815-6837
0.026
1
6mer
5160-5173
0.003
5
6mer
3125-3142
0.003
5
6mer
575-602
0.003
0
6mer
1299-1319
0.002
4
RP11-889D3.2
hsa-miR-148b-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496829
Biotype: lincRNA
Gene id: ENSG00000243572
Gene Name: RP11-889D3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-407
0.026
3
7mer
133-150
0.011
2
RP11-346D14.1
hsa-miR-148b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561320
Biotype: lincRNA
Gene id: ENSG00000259380
Gene Name: RP11-346D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-618
0.015
0
7mer
106-123
0.009
0
6mer
175-197
0.005
0
6mer
1923-1938
0.003
0
6mer
437-459
0.003
0
7mer
1665-1690
0.002
0
RP11-88I18.3
hsa-miR-148b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434656
Biotype: sense_intronic
Gene id: ENSG00000229019
Gene Name: RP11-88I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
796-816
0.035
1
6mer
95-114
0.002
0
KDM4A-AS1
hsa-miR-148b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000398804
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-341
0.037
1
XLOC_003069
hsa-miR-148b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006458
Biotype: transcript isomorph
Gene id: XLOC_003069
Gene Name: XLOC_003069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2378-2401
0.030
2
7mer
2517-2533
0.007
0
RP11-740P5.2
hsa-miR-148b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457440
Biotype: lincRNA
Gene id: ENSG00000233234
Gene Name: RP11-740P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
146-164
0.028
1
7mer
83-94
0.009
1
AP001429.1
hsa-miR-148b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602568
Biotype: sense_intronic
Gene id: ENSG00000270116
Gene Name: AP001429.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-83
0.037
1
CTD-3138B18.6
hsa-miR-148b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595301
Biotype: sense_intronic
Gene id: ENSG00000268201
Gene Name: CTD-3138B18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-227
0.037
0
RP11-20G6.2
hsa-miR-148b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567395
Biotype: lincRNA
Gene id: ENSG00000261090
Gene Name: RP11-20G6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-463
0.016
0
8mer
117-142
0.015
0
6mer
628-640
0.006
3
DAB1-AS1
hsa-miR-148b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000592838
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-409
0.019
3
7mer
130-150
0.010
0
6mer
28-46
0.008
3
MUC19
hsa-miR-148b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
7433-7457
0.006
1
7mer
3883-3904
0.005
4
7mer
3656-3674
0.004
4
7mer
2099-2123
0.004
2
7mer
22158-22173
0.002
1
6mer
7235-7252
0.002
1
6mer
7682-7699
0.002
1
6mer
3241-3255
0.002
4
6mer
1240-1255
0.001
1
7mer
20087-20113
0.001
Not Conserved
6mer
21075-21101
0.001
Not Conserved
6mer
18555-18578
0.001
1
6mer
22149-22165
0.001
0
6mer
22342-22368
0.001
1
6mer
9389-9403
0.001
1
6mer
6980-6996
0.001
0
6mer
8370-8386
0.001
0
XLOC_000782
hsa-miR-148b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
611-627
0.013
0
6mer
1704-1712
0.011
0
6mer
766-789
0.009
0
6mer
913-937
0.003
Not Conserved
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