LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
RP11-131K5.2
hsa-miR-148b-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
335-357
0.012
1
6mer
427-445
0.010
1
6mer
243-261
0.008
0
6mer
427-452
0.008
1
RP11-431M7.3
hsa-miR-148b-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502245
Biotype: antisense
Gene id: ENSG00000247193
Gene Name: RP11-431M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-340
0.019
0
7mer
788-803
0.012
3
8mer
775-789
0.008
0
RP11-874J12.4
hsa-miR-148b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577848
Biotype: antisense
Gene id: ENSG00000266401
Gene Name: RP11-874J12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1256-1271
0.031
10
6mer
610-629
0.003
1
6mer
696-721
0.003
1
6mer
559-583
0.003
0
RP4-710M16.2
hsa-miR-148b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451914
Biotype: lincRNA
Gene id: ENSG00000223956
Gene Name: RP4-710M16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17-35
0.039
0
RP11-308B16.2
hsa-miR-148b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502209
Biotype: lincRNA
Gene id: ENSG00000248783
Gene Name: RP11-308B16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-224
0.039
1
RP3-332B22.1
hsa-miR-148b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456896
Biotype: lincRNA
Gene id: ENSG00000236013
Gene Name: RP3-332B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-96
0.019
1
8mer
207-226
0.019
1
RP11-32D16.1
hsa-miR-148b-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522704
Biotype: lincRNA
Gene id: ENSG00000254135
Gene Name: RP11-32D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-45
0.039
7
RP11-715G15.1
hsa-miR-148b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419168
Biotype: lincRNA
Gene id: ENSG00000237468
Gene Name: RP11-715G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1242-1261
0.018
1
8mer
125-152
0.013
1
6mer
1981-1994
0.004
0
6mer
2096-2110
0.004
0
RP11-731D1.4
hsa-miR-148b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603264
Biotype: lincRNA
Gene id: ENSG00000270265
Gene Name: RP11-731D1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-54
0.033
3
6mer
324-337
0.006
0
AP000431.2
hsa-miR-148b-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000424219
Biotype: lincRNA
Gene id: ENSG00000229289
Gene Name: AP000431.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-51
0.023
1
7mer
404-419
0.011
0
6mer
24-43
0.004
1
KDM4A-AS1
hsa-miR-148b-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439057
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-183
0.038
1
XLOC_010279
hsa-miR-148b-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1618-1629
0.028
0
6mer
1753-1768
0.010
0
CTC-241F20.4
hsa-miR-148b-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600941
Biotype: lincRNA
Gene id: ENSG00000268186
Gene Name: CTC-241F20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-40
0.038
1
RP11-212I21.4
hsa-miR-148b-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576365
Biotype: lincRNA
Gene id: ENSG00000261997
Gene Name: RP11-212I21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
219-241
0.011
1
6mer
3741-3745
0.010
4
6mer
3743-3751
0.007
3
6mer
3378-3383
0.005
2
7mer
1651-1663
0.004
2
6mer
1725-1742
0.001
4
XXbac-BPGBPG55C20.2
hsa-miR-148b-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-557
0.012
1
8mer
3680-3703
0.008
0
7mer
4660-4679
0.006
Not Conserved
6mer
492-515
0.004
1
6mer
1072-1080
0.003
1
6mer
1787-1810
0.003
3
6mer
2307-2322
0.002
1
RP11-1217F2.15
hsa-miR-148b-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415836
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-481
0.038
1
AP000221.1
hsa-miR-148b-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419694
Biotype: lincRNA
Gene id: ENSG00000229962
Gene Name: AP000221.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-356
0.034
2
6mer
604-620
0.004
Not Conserved
AC093642.4
hsa-miR-148b-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-472
0.038
1
FAM95B1
hsa-miR-148b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000593216
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
562-583
0.022
0
6mer
568-589
0.016
0
SVIL-AS1
hsa-miR-148b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445521
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-135
0.038
2
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