LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Gene
miRNA
Score
DIANA Links
AC092667.2
hsa-miR-148b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434301
Biotype: antisense
Gene id: ENSG00000230393
Gene Name: AC092667.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2501-2523
0.030
3
6mer
2516-2535
0.006
0
6mer
1675-1689
0.005
6
AF131217.1
hsa-miR-148b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433310
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2580-2600
0.015
0
7mer
6000-6024
0.011
1
6mer
499-514
0.006
1
7mer
1339-1356
0.004
0
7mer
2018-2028
0.004
2
6mer
3100-3114
0.002
1
XLOC_002214
hsa-miR-148b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-205
0.027
1
6mer
1748-1767
0.009
0
6mer
1534-1560
0.005
0
RP11-36D19.8
hsa-miR-148b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416657
Biotype: lincRNA
Gene id: ENSG00000235858
Gene Name: RP11-36D19.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-289
0.040
3
LINC00692
hsa-miR-148b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451284
Biotype: lincRNA
Gene id: ENSG00000230891
Gene Name: LINC00692
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
876-899
0.040
2
RP11-543H12.1
hsa-miR-148b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547123
Biotype: antisense
Gene id: ENSG00000258026
Gene Name: RP11-543H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-760
0.023
1
7mer
159-181
0.017
3
GS1-124K5.4
hsa-miR-148b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452565
Biotype: lincRNA
Gene id: ENSG00000237310
Gene Name: GS1-124K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-326
0.040
1
SRGAP2-AS1
hsa-miR-148b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450872
Biotype: antisense
Gene id: ENSG00000233501
Gene Name: SRGAP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1348-1363
0.033
5
8mer+wobble
1957-1981
0.007
1
XLOC_001956
hsa-miR-148b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005063
Biotype: transcript isomorph
Gene id: XLOC_001956
Gene Name: XLOC_001956
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2259-2265
0.018
1
8mer
2130-2146
0.015
2
6mer
414-431
0.004
2
6mer
2999-3016
0.003
0
CTA-342B11.3
hsa-miR-148b-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12678-12700
0.010
1
9mer
19187-19206
0.006
1
7mer
7139-7150
0.005
3
7mer
19020-19038
0.004
1
6mer
15378-15395
0.002
0
7mer
7680-7693
0.002
1
6mer
17635-17646
0.002
1
6mer
22302-22314
0.002
Not Conserved
6mer
23711-23734
0.001
0
6mer
5981-5999
0.001
1
6mer
19321-19342
0.001
1
6mer
17669-17685
0.001
1
6mer
11074-11093
0.001
0
XLOC_011927
hsa-miR-148b-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024636
Biotype: transcript isomorph
Gene id: XLOC_011927
Gene Name: XLOC_011927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-326
0.040
Not Conserved
LINC00692
hsa-miR-148b-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_034055.1
Biotype: lincRNA
Gene id: NR_034055.1 (gene)
Gene Name: LINC00692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-900
0.040
2
RP11-358H18.3
hsa-miR-148b-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524885
Biotype: lincRNA
Gene id: ENSG00000254586
Gene Name: RP11-358H18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-596
0.040
Not Conserved
AC139099.5
hsa-miR-148b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570366
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-171
0.035
1
6mer
331-349
0.004
0
LINC01322
hsa-miR-148b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496693
Biotype: lincRNA
Gene id: ENSG00000244128
Gene Name: LINC01322
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
710-727
0.028
0
7mer
279-294
0.007
0
7mer
537-547
0.005
1
XLOC_003665
hsa-miR-148b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008209
Biotype: transcript isomorph
Gene id: XLOC_003665
Gene Name: XLOC_003665
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
561-580
0.025
1
8mer
281-298
0.015
1
RP11-522N14.2
hsa-miR-148b-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2003-2021
0.009
1
7mer
674-681
0.008
0
6mer
253-271
0.006
0
6mer
1863-1888
0.005
0
6mer
1367-1382
0.004
1
7mer
1092-1116
0.003
0
6mer
977-996
0.003
0
AC079807.2
hsa-miR-148b-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417692
Biotype: antisense
Gene id: ENSG00000233230
Gene Name: AC079807.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-372
0.021
1
7mer
589-611
0.018
2
RP5-965G21.4
hsa-miR-148b-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-38
0.027
1
6mer
2131-2151
0.012
2
RP11-234B24.2
hsa-miR-148b-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000527518
Biotype: lincRNA
Gene id: ENSG00000255474
Gene Name: RP11-234B24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-835
0.036
1
7mer
707-733
0.003
1
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