LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005238
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012453
Biotype: transcript isomorph
Gene id: XLOC_005238
Gene Name: XLOC_005238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
862-873
0.025
1
RP4-714D9.5
hsa-miR-146a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
3730-3748
0.007
3
7mer
3654-3668
0.006
1
7mer
1578-1604
0.004
1
6mer
4819-4842
0.004
0
6mer
4323-4343
0.003
2
AP000459.7
hsa-miR-146a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433101
Biotype: lincRNA
Gene id: ENSG00000227716
Gene Name: AP000459.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
708-730
0.025
1
XLOC_007279
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4841-4856
0.022
1
6mer
2101-2120
0.002
2
6mer
2837-2859
0.002
1
CFLAR-AS1
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_040030.1
Biotype: antisense
Gene id: NR_040030.1 (gene)
Gene Name: CFLAR-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.021
2
6mer
662-686
0.004
1
LINC01181
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000503718
Biotype: antisense
Gene id: ENSG00000250929
Gene Name: LINC01181
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-446
0.025
1
RP11-252I13.2
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502287
Biotype: lincRNA
Gene id: ENSG00000249959
Gene Name: RP11-252I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-104
0.017
1
6mer
471-497
0.004
1
6mer
509-533
0.003
1
6mer
453-471
0.002
1
RP11-325K4.3
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565861
Biotype: sense_intronic
Gene id: ENSG00000261270
Gene Name: RP11-325K4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-569
0.025
1
RP11-23D24.2
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488210
Biotype: antisense
Gene id: ENSG00000238755
Gene Name: RP11-23D24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
198-214
0.010
7
7mer
60-83
0.008
2
6mer
212-228
0.005
1
6mer
405-420
0.002
0
RP11-252I13.2
hsa-miR-146a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509458
Biotype: lincRNA
Gene id: ENSG00000249959
Gene Name: RP11-252I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-226
0.016
1
6mer
617-643
0.004
1
6mer
655-679
0.003
1
6mer
599-617
0.002
1
RP11-96K19.4
hsa-miR-146a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4040-4063
0.009
0
6mer
3293-3318
0.006
1
6mer
2678-2702
0.006
1
7mer
1591-1613
0.004
Not Conserved
XXyac-YX155B6.5
hsa-miR-146a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000599864
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-592
0.015
1
6mer
55-70
0.010
4
RP11-254I22.1
hsa-miR-146a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507997
Biotype: lincRNA
Gene id: ENSG00000250551
Gene Name: RP11-254I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-380
0.017
4
7mer
89-108
0.008
1
DLGAP1-AS1
hsa-miR-146a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577995
Biotype: antisense
Gene id: ENSG00000177337
Gene Name: DLGAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.025
6
RP11-3B12.3
hsa-miR-146a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420224
Biotype: lincRNA
Gene id: ENSG00000219445
Gene Name: RP11-3B12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-67
0.012
1
7mer
70-83
0.011
1
6mer
320-342
0.002
0
LINC01180
hsa-miR-146a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589259
Biotype: lincRNA
Gene id: ENSG00000266979
Gene Name: LINC01180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-339
0.014
1
6mer
1561-1586
0.004
0
7mer
1114-1139
0.004
0
6mer
1218-1243
0.003
2
RP11-80H5.2
hsa-miR-146a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454174
Biotype: antisense
Gene id: ENSG00000232936
Gene Name: RP11-80H5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-36
0.025
9
RP11-24F11.2
hsa-miR-146a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451485
Biotype: antisense
Gene id: ENSG00000223552
Gene Name: RP11-24F11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-183
0.025
3
RP4-539M6.20
hsa-miR-146a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608677
Biotype: sense_intronic
Gene id: ENSG00000273350
Gene Name: RP4-539M6.20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-320
0.015
0
6mer
336-357
0.010
4
LA16c-380H5.5
hsa-miR-146a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000607794
Biotype: lincRNA
Gene id: ENSG00000272079
Gene Name: LA16c-380H5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-87
0.022
4
6mer
120-139
0.003
Not Conserved
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