LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007688
hsa-miR-146a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-458
0.026
1
RP11-362K2.2
hsa-miR-146a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546977
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
783-805
0.026
1
XLOC_010584
hsa-miR-146a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021981
Biotype: transcript isomorph
Gene id: XLOC_010584
Gene Name: XLOC_010584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
333-347
0.021
1
6mer
267-292
0.005
2
ZRANB2-AS2
hsa-miR-146a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585415
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
658-680
0.018
0
6mer
77-103
0.004
1
6mer
101-120
0.004
3
RP11-16P20.3
hsa-miR-146a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521510
Biotype: antisense
Gene id: ENSG00000253875
Gene Name: RP11-16P20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-327
0.026
1
SATB1-AS1
hsa-miR-146a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595388
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.015
3
6mer
210-234
0.005
5
6mer
313-332
0.005
4
RP11-160H12.2
hsa-miR-146a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526344
Biotype: antisense
Gene id: ENSG00000255311
Gene Name: RP11-160H12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-284
0.015
1
6mer
126-149
0.005
1
7mer
387-411
0.005
Not Conserved
XLOC_001273
hsa-miR-146a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001891
Biotype: transcript isomorph
Gene id: XLOC_001273
Gene Name: XLOC_001273
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-62
0.015
0
7mer
231-250
0.010
0
RP11-324P9.1
hsa-miR-146a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548266
Biotype: lincRNA
Gene id: ENSG00000258140
Gene Name: RP11-324P9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
766-789
0.026
4
XLOC_000633
hsa-miR-146a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2654-2674
0.014
1
8mer
1133-1155
0.006
1
7mer
1108-1135
0.004
1
6mer
2415-2441
0.001
1
RP11-57H12.2
hsa-miR-146a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434207
Biotype: sense_intronic
Gene id: ENSG00000231992
Gene Name: RP11-57H12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-32
0.025
5
CFLAR-AS1
hsa-miR-146a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415011
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.022
2
6mer
662-686
0.004
1
RP11-264B17.3
hsa-miR-146a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000354453
Biotype: processed_transcript
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1675-1690
0.025
1
CTB-60E11.9
hsa-miR-146a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594676
Biotype: antisense
Gene id: ENSG00000269792
Gene Name: CTB-60E11.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-562
0.016
0
7mer
561-581
0.009
0
XXyac-YX155B6.5
hsa-miR-146a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595367
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-627
0.016
1
6mer
55-70
0.009
4
MIR143HG
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602964
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5734-5753
0.007
0
7mer
4956-4982
0.006
1
9mer
2106-2124
0.005
1
9mer
4654-4671
0.003
0
6mer
6771-6792
0.002
3
6mer
2865-2880
0.002
4
6mer
4146-4165
0.001
1
6mer
4310-4325
0.001
1
RP11-495P10.3
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452996
Biotype: lincRNA
Gene id: ENSG00000224481
Gene Name: RP11-495P10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1272-1286
0.020
1
6mer
1156-1178
0.005
1
AC144568.2
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522481
Biotype: lincRNA
Gene id: ENSG00000253896
Gene Name: AC144568.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-541
0.013
0
6mer
503-522
0.012
1
RP11-70D24.3
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000617603
Biotype: lincRNA
Gene id: ENSG00000277214
Gene Name: RP11-70D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-355
0.016
3
6mer
270-292
0.009
6
XLOC_001903
hsa-miR-146a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004057
Biotype: transcript isomorph
Gene id: XLOC_001903
Gene Name: XLOC_001903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-91
0.025
1
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