LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011161
hsa-miR-146a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023212
Biotype: transcript isomorph
Gene id: XLOC_011161
Gene Name: XLOC_011161
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-490
0.022
0
6mer
219-238
0.005
1
RP5-1051D14.1
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453569
Biotype: lincRNA
Gene id: ENSG00000236950
Gene Name: RP5-1051D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
197-216
0.020
1
6mer
65-85
0.007
1
LINC00963
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-301
0.009
1
6mer
72-97
0.006
3
6mer
9304-9327
0.005
1
6mer
2003-2015
0.002
3
6mer
4582-4604
0.001
1
8mer
6731-6743
0.001
Not Conserved
6mer
1426-1447
0.001
1
XLOC_013703
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
196-221
0.014
0
6mer
1943-1954
0.013
0
AC074286.1
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456746
Biotype: sense_overlapping
Gene id: ENSG00000213963
Gene Name: AC074286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4971-4988
0.011
3
6mer
374-400
0.009
8
6mer
193-213
0.003
0
6mer
4886-4905
0.003
1
RP11-87M18.2
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455438
Biotype: antisense
Gene id: ENSG00000226484
Gene Name: RP11-87M18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-415
0.015
8
7mer
95-115
0.010
Not Conserved
6mer
510-534
0.002
0
RP1-155D22.2
hsa-miR-146a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564697
Biotype: lincRNA
Gene id: ENSG00000260422
Gene Name: RP1-155D22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1076-1094
0.022
1
6mer
411-429
0.005
2
LINC00282
hsa-miR-146a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027048.1
Biotype: lincRNA
Gene id: NR_027048.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-369
0.018
2
7mer
3152-3174
0.007
0
6mer
2166-2185
0.002
0
AC024132.1
hsa-miR-146a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382007
Biotype: lincRNA
Gene id: ENSG00000205830
Gene Name: AC024132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4-8
0.012
7
6mer
771-796
0.004
4
6mer
2243-2263
0.004
1
6mer
1858-1873
0.003
1
6mer
1945-1958
0.002
Not Conserved
6mer
1346-1372
0.002
3
LINC00494
hsa-miR-146a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000545181
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2577-2596
0.020
0
7mer
1424-1449
0.004
3
6mer
375-399
0.003
0
AC007750.5
hsa-miR-146a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110255.1
Biotype: antisense
Gene id: NR_110255.1 (gene)
Gene Name: AC007750.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1398-1416
0.012
2
7mer
3221-3241
0.012
0
6mer
3104-3120
0.002
Not Conserved
XLOC_001198
hsa-miR-146a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001814
Biotype: transcript isomorph
Gene id: XLOC_001198
Gene Name: XLOC_001198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-47
0.026
0
RP11-69H14.6
hsa-miR-146a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564932
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-490
0.022
0
6mer
219-238
0.005
1
RP11-351D16.3
hsa-miR-146a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609407
Biotype: lincRNA
Gene id: ENSG00000273008
Gene Name: RP11-351D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-135
0.017
0
6mer
291-306
0.005
1
6mer
884-906
0.003
Not Conserved
6mer
852-871
0.002
0
NR2F1-AS1
hsa-miR-146a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606696
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2459-2483
0.019
2
6mer
1723-1742
0.003
2
6mer
2019-2045
0.002
0
6mer
1544-1561
0.002
Not Conserved
XLOC_007505
hsa-miR-146a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016665
Biotype: transcript isomorph
Gene id: XLOC_007505
Gene Name: XLOC_007505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-269
0.017
1
6mer
92-111
0.005
2
6mer
416-441
0.005
2
CTC-251D13.1
hsa-miR-146a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606930
Biotype: antisense
Gene id: ENSG00000271795
Gene Name: CTC-251D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-665
0.014
5
8mer
2965-2979
0.009
4
9mer
1535-1558
0.003
1
RP11-681H18.2
hsa-miR-146a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612252
Biotype: lincRNA
Gene id: ENSG00000277801
Gene Name: RP11-681H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-309
0.026
1
RP11-13N12.1
hsa-miR-146a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521411
Biotype: lincRNA
Gene id: ENSG00000253496
Gene Name: RP11-13N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-219
0.026
4
CTD-3023L14.1
hsa-miR-146a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524073
Biotype: lincRNA
Gene id: ENSG00000253774
Gene Name: CTD-3023L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-293
0.026
3
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