LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2015G9.2
hsa-miR-146a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562064
Biotype: lincRNA
Gene id: ENSG00000261175
Gene Name: CTD-2015G9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-529
0.027
1
LOC285762
hsa-miR-146a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2814-2840
0.010
0
7mer
3413-3435
0.007
0
7mer
2040-2067
0.006
1
6mer
857-877
0.003
0
6mer
1520-1536
0.002
Not Conserved
FAM226B
hsa-miR-146a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1431-1450
0.018
1
6mer
944-965
0.005
1
6mer
1190-1214
0.005
0
RAP2C-AS1
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441399
Biotype: antisense
Gene id: ENSG00000232160
Gene Name: RAP2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-300
0.013
0
6mer
3433-3442
0.006
2
6mer
696-721
0.004
3
6mer
1878-1892
0.002
1
6mer
1197-1214
0.002
0
CTD-2314G24.2
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
956-969
0.014
1
7mer
6577-6602
0.007
2
6mer
1448-1464
0.003
4
6mer
2656-2669
0.002
3
6mer
5173-5188
0.001
0
RP11-255H23.4
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599944
Biotype: lincRNA
Gene id: ENSG00000267924
Gene Name: RP11-255H23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
733-754
0.027
0
LCMT1-AS2
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2188-2207
0.023
1
6mer
541-555
0.004
0
RP11-508N22.9
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000419779
Biotype: lincRNA
Gene id: ENSG00000224761
Gene Name: RP11-508N22.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-294
0.027
Not Conserved
RP11-1C8.6
hsa-miR-146a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000577199
Biotype: lincRNA
Gene id: ENSG00000266289
Gene Name: RP11-1C8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
715-727
0.027
1
XLOC_001743
hsa-miR-146a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004943
Biotype: transcript isomorph
Gene id: XLOC_001743
Gene Name: XLOC_001743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-44
0.027
5
C1orf132
hsa-miR-146a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
130-150
0.007
1
9mer
4044-4063
0.005
1
6mer
14284-14299
0.004
1
7mer
3771-3794
0.004
5
8mer+wobble
8505-8524
0.003
1
6mer
1487-1504
0.001
1
6mer
8990-9011
0.001
1
6mer
11027-11052
0.001
1
AC007278.2
hsa-miR-146a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436582
Biotype: sense_intronic
Gene id: ENSG00000236525
Gene Name: AC007278.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1065-1090
0.012
0
6mer
79-97
0.007
1
6mer
124-142
0.005
3
6mer
369-387
0.004
1
XLOC_006390
hsa-miR-146a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013751
Biotype: transcript isomorph
Gene id: XLOC_006390
Gene Name: XLOC_006390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-67
0.019
1
6mer
139-154
0.004
4
6mer
4098-4124
0.002
0
6mer
2415-2433
0.001
3
6mer
919-938
0.001
0
IDI2-AS1
hsa-miR-146a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000536039
Biotype: antisense
Gene id: ENSG00000232656
Gene Name: IDI2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-197
0.012
0
6mer
511-536
0.006
2
6mer
528-545
0.005
1
6mer
448-470
0.004
2
MLK7-AS1
hsa-miR-146a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-24
0.021
1
6mer
854-858
0.006
9
RP1-79C4.1
hsa-miR-146a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413005
Biotype: lincRNA
Gene id: ENSG00000235303
Gene Name: RP1-79C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1908-1919
0.027
3
XLOC_009281
hsa-miR-146a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019478
Biotype: transcript isomorph
Gene id: XLOC_009281
Gene Name: XLOC_009281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-280
0.027
1
RP4-555D20.2
hsa-miR-146a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-561
0.014
2
6mer
5036-5055
0.005
1
8mer
2704-2716
0.003
1
6mer
4352-4378
0.002
1
6mer
3936-3961
0.002
0
FAM157C
hsa-miR-146a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570230
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1811-1828
0.025
0
6mer
1341-1360
0.002
Not Conserved
RP11-156E8.1
hsa-miR-146a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607453
Biotype: antisense
Gene id: ENSG00000272195
Gene Name: RP11-156E8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-269
0.023
3
6mer
728-751
0.004
1
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