LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004144
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008639
Biotype: transcript isomorph
Gene id: XLOC_004144
Gene Name: XLOC_004144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3976-3996
0.022
4
6mer
2995-3011
0.002
1
6mer
1371-1394
0.002
2
6mer
1790-1808
0.002
0
RP11-434D9.1
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509947
Biotype: retained_intron
Gene id: ENSG00000249364
Gene Name: RP11-434D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
717-737
0.028
6
RP11-326E22.1
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521685
Biotype: antisense
Gene id: ENSG00000254031
Gene Name: RP11-326E22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-180
0.028
2
RP11-379J5.5
hsa-miR-146a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109955.1
Biotype: antisense
Gene id: NR_109955.1 (gene)
Gene Name: RP11-379J5.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1532-1557
0.027
1
LINC01206
hsa-miR-146a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5614-5634
0.010
4
7mer
8730-8757
0.004
1
6mer
9275-9287
0.004
2
6mer
3422-3435
0.002
0
6mer
2767-2776
0.002
1
6mer
4110-4128
0.002
1
6mer
7830-7857
0.001
3
6mer
4390-4403
0.001
1
6mer
3505-3518
0.001
0
CTD-2015H3.1
hsa-miR-146a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583827
Biotype: lincRNA
Gene id: ENSG00000264080
Gene Name: CTD-2015H3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-150
0.023
4
6mer
518-544
0.005
0
CTD-2311M21.4
hsa-miR-146a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611178
Biotype: lincRNA
Gene id: ENSG00000274937
Gene Name: CTD-2311M21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-785
0.027
1
LINC00494
hsa-miR-146a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433094
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2305-2324
0.020
0
7mer
1152-1177
0.004
3
6mer
427-451
0.003
0
OSER1-AS1
hsa-miR-146a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000437730
Biotype: lincRNA
Gene id: ENSG00000223891
Gene Name: OSER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-293
0.027
0
RP11-162I7.1
hsa-miR-146a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561386
Biotype: lincRNA
Gene id: ENSG00000259284
Gene Name: RP11-162I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
313-336
0.018
0
6mer
22-48
0.005
1
6mer
585-598
0.004
2
SATB1-AS1
hsa-miR-146a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593444
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-101
0.016
3
6mer
201-225
0.006
5
6mer
304-323
0.005
4
RP11-3B12.2
hsa-miR-146a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424515
Biotype: lincRNA
Gene id: ENSG00000237764
Gene Name: RP11-3B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-96
0.027
1
LOC101929371
hsa-miR-146a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109861.1
Biotype: sense
Gene id: NR_109861.1 (gene)
Gene Name: LOC101929371
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-445
0.019
1
6mer
207-231
0.008
5
XLOC_011447
hsa-miR-146a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023647
Biotype: transcript isomorph
Gene id: XLOC_011447
Gene Name: XLOC_011447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-140
0.020
0
8mer
517-531
0.007
0
XLOC_013100
hsa-miR-146a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027059
Biotype: transcript isomorph
Gene id: XLOC_013100
Gene Name: XLOC_013100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
480-493
0.013
Not Conserved
7mer
363-386
0.006
Not Conserved
7mer
2599-2610
0.005
0
6mer
713-734
0.003
Not Conserved
6mer
1617-1631
0.001
Not Conserved
RP11-94L15.2
hsa-miR-146a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-519
0.013
3
6mer
6071-6091
0.007
2
6mer
3449-3473
0.003
6
6mer
4421-4444
0.003
4
6mer
1967-1990
0.002
2
GRM5-AS1
hsa-miR-146a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1312-1336
0.016
5
7mer
2992-3014
0.010
6
6mer
2209-2235
0.002
4
XLOC_009810
hsa-miR-146a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020476
Biotype: transcript isomorph
Gene id: XLOC_009810
Gene Name: XLOC_009810
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
251-278
0.024
1
6mer
286-299
0.003
1
RP11-402P6.9
hsa-miR-146a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422194
Biotype: lincRNA
Gene id: ENSG00000237265
Gene Name: RP11-402P6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-31
0.027
1
AC073626.2
hsa-miR-146a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415146
Biotype: antisense
Gene id: ENSG00000224595
Gene Name: AC073626.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-302
0.027
5
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