LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP11-640N11.2
hsa-miR-146a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
46-62
0.024
5
6mer
1944-1954
0.001
0
6mer
2159-2185
0.001
3
6mer
1247-1259
0.001
0
SATB1-AS1
hsa-miR-146a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598688
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
3
6mer
210-234
0.006
5
6mer
313-332
0.006
4
NUTM2B-AS1
hsa-miR-146a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600376
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-327
0.028
2
RP11-412H8.2
hsa-miR-146a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549742
Biotype: lincRNA
Gene id: ENSG00000258175
Gene Name: RP11-412H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-111
0.028
0
SATB1-AS1
hsa-miR-146a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593741
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-287
0.018
3
6mer
490-509
0.005
4
6mer
387-411
0.005
5
RP11-95O2.5
hsa-miR-146a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589281
Biotype: antisense
Gene id: ENSG00000267707
Gene Name: RP11-95O2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-32
0.028
7
RP4-564O4.1
hsa-miR-146a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000453921
Biotype: lincRNA
Gene id: ENSG00000232200
Gene Name: RP4-564O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-372
0.028
1
XLOC_011565
hsa-miR-146a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023768
Biotype: transcript isomorph
Gene id: XLOC_011565
Gene Name: XLOC_011565
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-428
0.014
0
7mer
367-389
0.013
0
XLOC_007035
hsa-miR-146a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-66
0.014
0
9mer
5229-5254
0.005
1
6mer
1041-1068
0.003
3
6mer
7307-7334
0.002
1
6mer
14838-14861
0.002
0
6mer
7874-7885
0.001
1
6mer
7173-7193
0.001
0
LINC00557
hsa-miR-146a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563184
Biotype: lincRNA
Gene id: ENSG00000260962
Gene Name: LINC00557
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
936-958
0.014
2
6mer
102-119
0.006
3
6mer
175-194
0.005
4
6mer
192-217
0.003
3
AC139099.5
hsa-miR-146a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570366
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-84
0.015
0
6mer
86-105
0.012
1
CTD-2303H24.2
hsa-miR-146a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000425211
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-612
0.013
0
6mer
703-722
0.003
0
7mer
3566-3585
0.003
Not Conserved
6mer
4127-4145
0.003
0
6mer
3849-3862
0.002
0
7mer
3629-3654
0.002
Not Conserved
6mer
2752-2766
0.002
0
XLOC_011277
hsa-miR-146a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023436
Biotype: transcript isomorph
Gene id: XLOC_011277
Gene Name: XLOC_011277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-325
0.018
0
6mer
574-587
0.005
2
6mer
8-34
0.005
1
CTD-2143L24.1
hsa-miR-146a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512976
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-39
0.028
2
RP11-3B12.2
hsa-miR-146a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110188.1
Biotype: lincRNA
Gene id: NR_110188.1 (gene)
Gene Name: RP11-3B12.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-79
0.028
1
RP11-982M15.7
hsa-miR-146a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553433
Biotype: lincRNA
Gene id: ENSG00000258736
Gene Name: RP11-982M15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-472
0.028
1
AF131217.1
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000452028
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-346
0.021
0
7mer
284-302
0.006
1
RP11-814P5.1
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000503496
Biotype: antisense
Gene id: ENSG00000250007
Gene Name: RP11-814P5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2264-2280
0.020
1
6mer
2505-2521
0.004
1
6mer
2480-2499
0.003
1
RP4-655J12.4
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423907
Biotype: lincRNA
Gene id: ENSG00000233154
Gene Name: RP4-655J12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-69
0.019
2
7mer
421-432
0.008
1
RP11-379J5.5
hsa-miR-146a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428285
Biotype: antisense
Gene id: ENSG00000233993
Gene Name: RP11-379J5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1532-1557
0.028
1
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