LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP11-423J7.1
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505586
Biotype: lincRNA
Gene id: ENSG00000250704
Gene Name: RP11-423J7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-86
0.029
2
RP11-378J18.8
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608771
Biotype: antisense
Gene id: ENSG00000272750
Gene Name: RP11-378J18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-352
0.021
3
6mer
768-793
0.005
9
6mer
1507-1517
0.004
4
XLOC_000850
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000528
Biotype: transcript isomorph
Gene id: XLOC_000850
Gene Name: XLOC_000850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-564
0.023
2
6mer
492-507
0.006
1
HOXA11-AS
hsa-miR-146a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000522674
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-41
0.019
7
6mer
1002-1021
0.004
6
6mer
139-163
0.003
1
6mer
281-305
0.003
2
XLOC_005915
hsa-miR-146a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011240
Biotype: transcript isomorph
Gene id: XLOC_005915
Gene Name: XLOC_005915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-458
0.015
0
7mer
100-126
0.008
1
6mer
42-67
0.005
2
OSER1-AS1
hsa-miR-146a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000623343
Biotype: lincRNA
Gene id: ENSG00000223891
Gene Name: OSER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-513
0.029
0
TGFB2-AS1
hsa-miR-146a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414452
Biotype: antisense
Gene id: ENSG00000232480
Gene Name: TGFB2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-419
0.025
6
6mer
149-172
0.004
0
PCAT18
hsa-miR-146a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579458
Biotype: lincRNA
Gene id: ENSG00000265369
Gene Name: PCAT18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-277
0.025
4
6mer
2099-2119
0.004
0
LINC00865
hsa-miR-146a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448963
Biotype: lincRNA
Gene id: ENSG00000232229
Gene Name: LINC00865
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3976-3993
0.015
1
8mer
500-524
0.012
0
6mer
3041-3055
0.001
1
6mer
2658-2676
0.001
1
RP11-116D17.4
hsa-miR-146a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617627
Biotype: lincRNA
Gene id: ENSG00000276308
Gene Name: RP11-116D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1378-1395
0.016
2
7mer
524-536
0.008
0
6mer
1705-1728
0.004
1
LINC01346
hsa-miR-146a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412674
Biotype: lincRNA
Gene id: ENSG00000233304
Gene Name: LINC01346
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-706
0.026
0
6mer
2627-2646
0.002
1
6mer
1950-1966
0.001
Not Conserved
CTD-2074D8.1
hsa-miR-146a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507526
Biotype: lincRNA
Gene id: ENSG00000250694
Gene Name: CTD-2074D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-166
0.029
0
LOC286186
hsa-miR-146a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_033893.1
Biotype: lincRNA
Gene id: NR_033893.1 (gene)
Gene Name: LOC286186
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
983-1007
0.029
0
RP11-325K4.2
hsa-miR-146a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570210
Biotype: sense_intronic
Gene id: ENSG00000261114
Gene Name: RP11-325K4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-283
0.029
1
LOC100129034
hsa-miR-146a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027406.1
Biotype: antisense
Gene id: NR_027406.1 (gene)
Gene Name: LOC100129034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
379-406
0.017
1
6mer
197-218
0.005
8
6mer
172-191
0.003
2
6mer
5028-5040
0.002
1
6mer
2294-2313
0.001
Not Conserved
RP11-2E11.5
hsa-miR-146a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000562524
Biotype: lincRNA
Gene id: ENSG00000259920
Gene Name: RP11-2E11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-499
0.028
1
RP11-402P6.9
hsa-miR-146a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433410
Biotype: retained_intron
Gene id: ENSG00000237265
Gene Name: RP11-402P6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-28
0.028
1
RP11-192H23.7
hsa-miR-146a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577814
Biotype: antisense
Gene id: ENSG00000264044
Gene Name: RP11-192H23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-51
0.015
6
7mer
1183-1202
0.014
1
LINC01299
hsa-miR-146a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520902
Biotype: lincRNA
Gene id: ENSG00000254081
Gene Name: LINC01299
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
983-1007
0.028
0
RP11-116N8.4
hsa-miR-146a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000546376
Biotype: lincRNA
Gene id: ENSG00000257826
Gene Name: RP11-116N8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-139
0.019
3
7mer
428-450
0.009
2
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