LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013235
hsa-miR-146a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026839
Biotype: transcript isomorph
Gene id: XLOC_013235
Gene Name: XLOC_013235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
144-170
0.010
3
7mer
2000-2022
0.008
0
6mer
360-384
0.007
1
7mer
2191-2215
0.004
0
SLC7A11-AS1
hsa-miR-146a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-720
0.015
0
7mer
4094-4108
0.005
Not Conserved
9mer
1617-1631
0.003
0
9mer
2236-2253
0.003
1
6mer
3603-3629
0.003
1
6mer
1687-1710
0.000
0
RP1-60O19.1
hsa-miR-146a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602934
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
695-714
0.021
1
6mer
2128-2153
0.004
1
6mer
1464-1488
0.004
5
XLOC_013700
hsa-miR-146a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028027
Biotype: transcript isomorph
Gene id: XLOC_013700
Gene Name: XLOC_013700
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-373
0.029
1
XLOC_004437
hsa-miR-146a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010001
Biotype: transcript isomorph
Gene id: XLOC_004437
Gene Name: XLOC_004437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1710-1728
0.023
1
7mer
817-838
0.006
2
SATB1-AS1
hsa-miR-146a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598498
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-71
0.017
3
6mer
171-195
0.006
5
6mer
274-293
0.006
4
LINC00240
hsa-miR-146a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607607
Biotype: lincRNA
Gene id: ENSG00000224843
Gene Name: LINC00240
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4772-4798
0.020
1
6mer
5152-5173
0.004
1
6mer
4572-4595
0.003
1
6mer
2513-2535
0.003
3
AC108056.1
hsa-miR-146a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000442020
Biotype: lincRNA
Gene id: ENSG00000229565
Gene Name: AC108056.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-544
0.029
0
BTBD9-AS1
hsa-miR-146a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412822
Biotype: antisense
Gene id: ENSG00000226533
Gene Name: BTBD9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-161
0.025
4
6mer
287-306
0.005
2
XLOC_002302
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004433
Biotype: transcript isomorph
Gene id: XLOC_002302
Gene Name: XLOC_002302
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
738-763
0.022
1
6mer
1454-1481
0.007
1
LINC01204
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435394
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-261
0.022
1
8mer
1084-1102
0.004
0
6mer
1532-1557
0.003
3
RP5-991G20.2
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000558618
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-468
0.023
4
6mer
53-78
0.006
3
RP13-554M15.8
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613771
Biotype: lincRNA
Gene id: ENSG00000277186
Gene Name: RP13-554M15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-170
0.029
0
SVIL-AS1
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-274
0.029
1
AC069277.2
hsa-miR-146a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414438
Biotype: lincRNA
Gene id: ENSG00000189229
Gene Name: AC069277.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
733-753
0.025
1
6mer
273-287
0.005
1
CTD-2540L5.6
hsa-miR-146a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2234-2260
0.027
2
6mer
1646-1670
0.002
1
USP2-AS1
hsa-miR-146a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498979
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2317-2330
0.011
1
7mer
2328-2349
0.006
Not Conserved
6mer
2147-2160
0.005
0
6mer
2299-2319
0.003
1
6mer
1018-1040
0.003
3
SNHG3
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437681
Biotype: retained_intron
Gene id: ENSG00000242125
Gene Name: SNHG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-343
0.017
1
7mer
2420-2442
0.007
0
6mer
382-399
0.004
1
RP11-748L13.6
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568270
Biotype: lincRNA
Gene id: ENSG00000260151
Gene Name: RP11-748L13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1353-1371
0.018
0
6mer
260-276
0.007
1
6mer
859-872
0.004
0
RP11-67K19.3
hsa-miR-146a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423715
Biotype: antisense
Gene id: ENSG00000230894
Gene Name: RP11-67K19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
530-549
0.013
1
8mer
1804-1830
0.007
2
6mer
4888-4914
0.004
0
6mer
562-574
0.003
1
6mer
1212-1233
0.002
1
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